PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02418.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 291aa MW: 33499.9 Da PI: 5.3484

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02418.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.9e-15	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++q + +L++a ++ +l+rg+l++++W++vs+++ + + +r+ +qCk++++ l+k+yk +k+ + + + +s++p+ Sme2.5_02418.1_g00006.1 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDAVnalhgHTLKTRRTDVQCKNRIDTLKKKYKVEKAKIVESNGTLTSSWPF 109 7************************************999999999***************9999998888788889* PP trihelix 82 fdqle 86 f++l+ Sme2.5_02418.1_g00006.1 110 FERLD 114 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-25	22	114	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGEITDSSTQ IAMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDA 60 VNALHGHTLK TRRTDVQCKN RIDTLKKKYK VEKAKIVESN GTLTSSWPFF ERLDLLIGNS 120 DKKATPLMVS PLPLPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDDS CFRRNYSAVA 180 AAAAAGGGEE DYDDEEEGEE EDMEMTEENW EEDGMRRLAK AIERFGEIYE RVEGMKQRQM 240 VELEKQRMQF AKDLEVQRMQ LFMDTQVQLE KIKHTKRSGS DGIKFTPFDF S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063492.1	1e-162	trihelix transcription factor ASIL2-like
TrEMBL	M1AN54	1e-160	M1AN54_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026432	1e-160	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	6e-33	sequence-specific DNA binding transcription factors