PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02384.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 688aa    MW: 77371.9 Da    PI: 9.3239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02384.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.1e-114781898
                             --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             +p +f++++ ++  ++  + le +sg++Wev++  + ++g+++l+kGW++F++   +  g ++++ ++ rs f  +v++f+
  Sme2.5_02384.1_g00006.1  4 IPEDFVRRYCKNMLNP--VYLEVPSGEVWEVEV--EHSQGQIWLAKGWQDFCECYSISCGHVLMIGYNARSHF--NVTIFD 78
                             9999**9995454444..***************..9*******************************999999..999987 PP
2B333.67.1e-111632203998
                              EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              +++s+ sW vk+++   + +   + GWk Fv +n+Lk+gD++vF+++++ +    v++fr
  Sme2.5_02384.1_g00006.1 163 KSQSSGSWFVKCTFGIADAK--VGYGWKAFVLDNKLKVGDVCVFEVIKDAQLFVDVTIFR 220
                              6788999*****77666644..788********************998855546677776 PP
3B335.51.8e-11396484799
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                              ps+v+k   l ++   a ++  +k +   l+l  +   sW+vk+    +    ++   Wk Fv +n+Lk gD++vF+l++  + f 
  Sme2.5_02384.1_g00006.1 396 PSYVSKPYTLNISFLIAWKCFREK-C-GNLVLHVPGRGSWSVKYVLGMSA--PTIHFTWKAFVLDNKLKIGDVCVFELIKGaQPF- 476
                              566666665555555566664332.3.379999***********555554..555556*********************875777. PP

                              .EEEEE-S CS
                       B3  92 lvvkvfrk 99 
                              l v++fr+
  Sme2.5_02384.1_g00006.1 477 LDVTIFRA 484
                              99999986 PP
4B353.35e-17588681296
                              EEE-..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   2 fkvltpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              ++ + ps+v+      rl++  + a+++ + k++  +++l+ +s r+W+vk+++ k+ g+  +++GWkeFv +n+Lk+gD+++F+ 
  Sme2.5_02384.1_g00006.1 588 ISFMQPSYVSHArgpMRLTITGSVARKFFSAKHS--DVVLQVSSKRRWTVKCTVGKSNGK--FGAGWKEFVLDNNLKVGDVCLFEW 669
                              444555555554777899**********766544..8***************77666666..8**********************9 PP

                              -SSSEE..EEEE CS
                       B3  85 dgrsefelvvkv 96 
                               grs+  ++v +
  Sme2.5_02384.1_g00006.1 670 AGRSKLLFNVII 681
                              888777566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.351180IPR003340B3 DNA binding domain
SMARTSM010190.024180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-13380IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-9478No hitNo description
PfamPF023623.8E-8478IPR003340B3 DNA binding domain
SMARTSM010190.069124222IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-10163221IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-8163219IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-10163221IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925169222IPR003340B3 DNA binding domain
CDDcd100172.50E-8169220No hitNo description
Gene3DG3DSA:2.40.330.103.6E-16382484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-16383484IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-7389485IPR003340B3 DNA binding domain
PROSITE profilePS508639.573390485IPR003340B3 DNA binding domain
CDDcd100171.10E-11394483No hitNo description
PfamPF023624.3E-8419484IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-23579682IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20580683IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-18585683No hitNo description
SMARTSM010191.8E-10586685IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449590685IPR003340B3 DNA binding domain
PfamPF023621.3E-14590682IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MQKIPEDFVR RYCKNMLNPV YLEVPSGEVW EVEVEHSQGQ IWLAKGWQDF CECYSISCGH  60
VLMIGYNARS HFNVTIFDLS AAEIEYPYSK HIFHCHETHH APKSDLAELD DSVDIIEGVQ  120
RSPKLKEKVP GMFEHPFENL GHGQSSKRKR HDEDLASPSF TRKSQSSGSW FVKCTFGIAD  180
AKVGYGWKAF VLDNKLKVGD VCVFEVIKDA QLFVDVTIFR AAGSTPMHNI VGEEPGGSDS  240
KSKVIITDNS VPCSQPKVVQ TKKLKHQAGS SYGFNSNIKE EHGQDTEIMH SVKILGHCPL  300
GHGSKRKRPE GEAEDDASID VHTKSLKVEM SQDDVASPSF TRKPKRSGES CRMRKQQAEM  360
VYGKEMTVLD KERTIAYERA KAFKSKNPFV IYFMQPSYVS KPYTLNISFL IAWKCFREKC  420
GNLVLHVPGR GSWSVKYVLG MSAPTIHFTW KAFVLDNKLK IGDVCVFELI KGAQPFLDVT  480
IFRAAERKPM HKINGGVSDC KNKTINTENS VPCSQPKIFH SQKLNLEKKQ NGDSDGFITS  540
KIKEELGEGT VRHMQQSKSS CMGTMVAKEM VMAYQKAKAF TSKNPFFISF MQPSYVSHAR  600
GPMRLTITGS VARKFFSAKH SDVVLQVSSK RRWTVKCTVG KSNGKFGAGW KEFVLDNNLK  660
VGDVCLFEWA GRSKLLFNVI IFPSAEVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1555668818146B3 domain-containing transcription factor VRN1
4i1k_B4e-1555668818146B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490765.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2
RefseqXP_016567861.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X1
TrEMBLA0A1S4BPH10.0A0A1S4BPH1_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A1U8G9510.0A0A1U8G951_CAPAN; B3 domain-containing protein Os03g0619600-like isoform X1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-18B3 family protein