PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02381.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26916.1 Da PI: 6.9714 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 39 | 92 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH+ Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ Sme2.5_02381.1_g00010.1 39 PRLRWTHDLHATFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 92 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 35 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.174 | 35 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-15 | 37 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-24 | 39 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-7 | 40 | 91 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNRLDHFSEN SPSSMKQPTF ENSSNKSSGV RPYVRSKMPR LRWTHDLHAT FVHAVERLGG 60 EDRATPKMVL QLMDVKGLTI SHVKSHLQMY RSMKHEELMQ AIAEAGNVIK RNRMDGPDQT 120 NYPHGNFDHH YYNGHLNSTI TTNFSGLIAS NPTFFPLAPW KLMTEKQMGL EGRSNSACNM 180 FWDFFNGYTT IQDRNIGHEY GSSLSNKQFS IIDVEEEAQD SGSTVNNNDI SLDLTLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 40 | 95 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 40 | 95 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 40 | 95 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 40 | 95 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 40 | 95 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 3e-33 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233787.1 | 1e-128 | myb family transcription factor EFM-like isoform X1 | ||||
Refseq | XP_015065526.1 | 1e-128 | myb family transcription factor EFM-like | ||||
TrEMBL | A0A1U8G2A1 | 1e-103 | A0A1U8G2A1_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3A9A5 | 1e-103 | A0A2G3A9A5_CAPAN; putative two-component response regulator ARR19 | ||||
STRING | Solyc02g080860.1.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-34 | G2-like family protein |