PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02371.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 43888.6 Da PI: 7.8089 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.7e-21 | 96 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a+++++g Sme2.5_02371.1_g00003.1 96 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDEAALRFRG 145 7********.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.501 | 96 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-33 | 96 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-14 | 96 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-23 | 96 | 154 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-38 | 96 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 97 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.42E-29 | 104 | 155 | No hit | No description |
PRINTS | PR00367 | 5.9E-12 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MFGGNINREE EMSVMVSALT HVVAGNQNVS SILGEKRGRD ESSHATNTSH ISGGEDTSIR 60 TITSNRPTTE ATFVYTTSTN YEYDHQNSGT NQPRRRYRGV RQRPWGKWAA EIRDPYKAAR 120 VWLGTFDTAE DAARAYDEAA LRFRGSKAKL NFPENVRLLH SSIQHPTNTL YSLSSSPEPI 180 VHTSSPLYRS NFITRHSSRD EEPIVHTSSS MDSSNLITRH SSRHEDPIVH TSSMDRSNFV 240 TRHSSRDKEP IVHTSLNRSN FITGHSSRDE DVSSLYHSNF ITGHSSRDEE RMAHASSLYR 300 SNIITGHSSR DEESIVHASS MYHSNFRGHH SRDEKPIVHT SSSLYRSNFI ERASRNDPGV 360 QQGEYFPYFH EAAKSNWSNY DHPSSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-25 | 95 | 156 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 8e-72 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357342.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | M1BQQ2 | 1e-125 | M1BQQ2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050718 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 7e-29 | ERF family protein |