PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02334.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HSF

Protein Properties

Length: 496aa MW: 54837.6 Da PI: 4.9519

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02334.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.5	1.6e-36	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d+++++++sws+++nsfvvl+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Sme2.5_02334.1_g00004.1 17 FLSKTYDMVDDPSTDSVVSWSKSNNSFVVLNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 93 9**************************************************************999.........***** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkkse 103 kg+k+ll++i r+k + Sme2.5_02334.1_g00004.1 94 KGNKHLLKSISRRKPS 109 ***********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.7E-39	9	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.07E-35	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-61	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-20	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.3E-31	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-20	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-20	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MDGVHEAPMA VNSPPPFLSK TYDMVDDPST DSVVSWSKSN NSFVVLNVPE FARDILPKYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLKGNKHLL KSISRRKPSH VQGHQQTTSK 120 VPNASVASCV EVGKFGIEEE VERLKRDKDI LMQELVKLRQ QQQETDHQLV TVGQRFQLME 180 NRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRLITGSNKK RRLPDQAEED VACKLVNSLQ 240 DGQVVRYQPS MNEAAKALLQ QILKINASGK LDHRLNTNGF LTNNRLPPKN AVDSSGTSSC 300 ISGVTPSEVL STSSQSNLMS DSGFPFNSCP SIMSETQSST TVVPGEAKVP TLPESDVLNS 360 QAVHDLPELS QEQRINRYDT LGVTDLKMSE VGNMPDIDTT QGILDGLTTI VPDEFSINTD 420 GDVLLNDVPK LPAINDIFWD QILSASESPL TGDTDEIGSL AVGEDLPGVQ GSDWDKLKDM 480 HHLTEQMGLL SSVAQI

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MDGVHEAPMA VNSPPPFLSK TYDMVDDPST DSVVSWSKSN NSFVVLNVPE FARDILPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLKGNKHLL KSISRRKPSH VQGHQQTTSK  120
VPNASVASCV EVGKFGIEEE VERLKRDKDI LMQELVKLRQ QQQETDHQLV TVGQRFQLME  180
NRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRLITGSNKK RRLPDQAEED VACKLVNSLQ  240
DGQVVRYQPS MNEAAKALLQ QILKINASGK LDHRLNTNGF LTNNRLPPKN AVDSSGTSSC  300
ISGVTPSEVL STSSQSNLMS DSGFPFNSCP SIMSETQSST TVVPGEAKVP TLPESDVLNS  360
QAVHDLPELS QEQRINRYDT LGVTDLKMSE VGNMPDIDTT QGILDGLTTI VPDEFSINTD  420
GDVLLNDVPK LPAINDIFWD QILSASESPL TGDTDEIGSL AVGEDLPGVQ GSDWDKLKDM  480
HHLTEQMGLL SSVAQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-26	15	106	27	129	Heat shock factor protein 1
5d5v_B	4e-26	15	106	27	129	Heat shock factor protein 1
5d5v_D	4e-26	15	106	27	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564126.1	0.0	PREDICTED: heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	1e-152	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2G3ARP3	0.0	A0A2G3ARP3_CAPCH; Heat stress transcription factor A-1
STRING	PGSC0003DMT400008199	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-136	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]