PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02316.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 303aa    MW: 34344.7 Da    PI: 6.3081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02316.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
  Sme2.5_02316.1_g00005.1 14 RGPWTAEEDAKILAYVATHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                             89********************************************97 PP

2Myb_DNA-binding48.42.2e-1568110246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +++T++E++ +++++k  G++ W++Ia+ ++ gRt++++k++w++
  Sme2.5_02316.1_g00005.1  68 DNFTPQEEDCILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                              68*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.647965IPR017930Myb domain
SuperFamilySSF466891.09E-3111108IPR009057Homeodomain-like
SMARTSM007174.5E-151363IPR001005SANT/Myb domain
PfamPF002492.5E-161461IPR001005SANT/Myb domain
CDDcd001671.62E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465117IPR009057Homeodomain-like
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129418.49866116IPR017930Myb domain
PfamPF002492.8E-1469110IPR001005SANT/Myb domain
CDDcd001671.63E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG  120
IDPLTHKPFA QVFAEYGKIS GLPIQNARNH IQLSNNTTDK NQVSMESKQF PFNITNDQLH  180
ENYIWDSKET HSFSEVISST TSCNAIGYHY PPSFSSVQPS SSSWNELILG DPFTISGAEQ  240
KQGTFLSNSL PKENPGVTEL EEMQPVEEAT CSYAMDSFVD TILSRDKQML MDFPPLMDVY  300
LDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469621e-66AC246962.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence.
GenBankAC2470251e-66AC247025.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence.
GenBankHG9755151e-66HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571671.11e-176PREDICTED: transcription factor MYB35
TrEMBLA0A1U8GK761e-175A0A1U8GK76_CAPAN; Myb-related protein
TrEMBLA0A2G2ZNR51e-175A0A2G2ZNR5_CAPAN; transcription factor MYB35
STRINGXP_009606135.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-80MYB family protein