PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02316.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34344.7 Da PI: 6.3081 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl Sme2.5_02316.1_g00005.1 14 RGPWTAEEDAKILAYVATHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E++ +++++k G++ W++Ia+ ++ gRt++++k++w++ Sme2.5_02316.1_g00005.1 68 DNFTPQEEDCILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.647 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.498 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG 120 IDPLTHKPFA QVFAEYGKIS GLPIQNARNH IQLSNNTTDK NQVSMESKQF PFNITNDQLH 180 ENYIWDSKET HSFSEVISST TSCNAIGYHY PPSFSSVQPS SSSWNELILG DPFTISGAEQ 240 KQGTFLSNSL PKENPGVTEL EEMQPVEEAT CSYAMDSFVD TILSRDKQML MDFPPLMDVY 300 LDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246962 | 1e-66 | AC246962.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | AC247025 | 1e-66 | AC247025.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | HG975515 | 1e-66 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571671.1 | 1e-176 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A1U8GK76 | 1e-175 | A0A1U8GK76_CAPAN; Myb-related protein | ||||
TrEMBL | A0A2G2ZNR5 | 1e-175 | A0A2G2ZNR5_CAPAN; transcription factor MYB35 | ||||
STRING | XP_009606135.1 | 1e-153 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-80 | MYB family protein |