PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02309.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79843.3 Da    PI: 5.8671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02309.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17e-1954109156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++e+e++++++++p+ ++r+eL  klgL+  qVk+WFqN+R+++k
  Sme2.5_02309.1_g00006.1  54 KKRYHRHTQHQIQEMEAFYKECNHPDDKQRRELGIKLGLEPLQVKFWFQNKRTQMK 109
                              688999***********************************************998 PP
2START199.61.3e-622434641206
                              HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              ela +a++elv++a+ eep+W+  s     e + ++e+ + f+++ +      s+ea r+++vv+m++ +lve+l+d++ +W+  +
  Sme2.5_02309.1_g00006.1 243 ELAVTAMEELVRMAQTEEPLWMPTSgiistETLCEQEYARMFPRGIGpksstLSSEATRETAVVIMNHINLVEILMDVN-KWTCVF 327
                              57899***********************99999***********999********************************.****** PP

                              S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                    START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                              a    ka+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vd+S+++ ++      v R +++pSg
  Sme2.5_02309.1_g00006.1 328 AgivsKAMTLEVLSTGvagnhnGALQVMTAEFQVPSPLVPtRENYFVRYCKQHAEGTWAVVDISLENLRSTA----VSRYRRRPSG 409
                              *********************************************************************987....677888**** PP

                              EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +lie+++ng+s+vtwvehv++++r +h ++++lv+sg+a+gak+wvatl+rqce+
  Sme2.5_02309.1_g00006.1 410 CLIEELQNGYSRVTWVEHVEVDERAVHDIYKPLVNSGIAFGAKRWVATLNRQCER 464
                              *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2131109IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1839111IPR009057Homeodomain-like
PROSITE profilePS5007115.2451111IPR001356Homeobox domain
SMARTSM003893.9E-1752115IPR001356Homeobox domain
PfamPF000461.7E-1654109IPR001356Homeobox domain
CDDcd000861.72E-1654112No hitNo description
PROSITE profilePS5084846.093234467IPR002913START domain
SuperFamilySSF559618.46E-34235466No hitNo description
CDDcd088755.55E-120238463No hitNo description
SMARTSM002342.8E-59243464IPR002913START domain
PfamPF018527.4E-53244464IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-5313464IPR023393START-like domain
SuperFamilySSF559611.86E-25482717No hitNo description
PROSITE profilePS5084810.171513586IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFNSQHQLLD MSSSAQRTPE NELDFLRDES GNENMEAPNS GDDQADPNQP PNKKKRYHRH  60
TQHQIQEMEA FYKECNHPDD KQRRELGIKL GLEPLQVKFW FQNKRTQMKA QHERSENAQL  120
RNENEKLRAE NSRYKEALNN AICPNCGGPA SVGEMSFDEQ HLRIENARLR DEIDRITGVA  180
GGYVGKSSLN FPPHQLPPPE APRCMDVAFG PQSSLHGEMF PSGDLLRMTA VGLTDAEKPM  240
VIELAVTAME ELVRMAQTEE PLWMPTSGII STETLCEQEY ARMFPRGIGP KSSTLSSEAT  300
RETAVVIMNH INLVEILMDV NKWTCVFAGI VSKAMTLEVL STGVAGNHNG ALQVMTAEFQ  360
VPSPLVPTRE NYFVRYCKQH AEGTWAVVDI SLENLRSTAV SRYRRRPSGC LIEELQNGYS  420
RVTWVEHVEV DERAVHDIYK PLVNSGIAFG AKRWVATLNR QCERLASAMA NNVSTGDTDL  480
LSNPAGRKSM LKLAERMVTS FCAGVGSSTA HVWTVLSGSG SDDVRVMTRK SVADPGRPAG  540
IVLSAATSFW LPVSPRRVFD FLRDENSRSQ WDILSNGGIV QEMSHIANGR DPGNCVSLLR  600
VNSGTNFNQS NMLILQESVT DPTGSYVIYA PVDTTAMNLV LSGGDPDYAA LLPSGFAILP  660
DGPMNHDGGN SEIGPVGGSL LTVAFQILVD SVPTAKLSLG SIATVNSLIK CTVKKIKEAV  720
TSENAP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348085.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_015164555.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLM0ZPP80.0M0ZPP8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000052770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]