PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02298.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 1274aa MW: 143320 Da PI: 7.3289 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.4 | 4.1e-21 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvlt sd++++g +++ +k+a+e+ ++++ +++l+ +d++ +W +k+i+r++++r++lt+GW+ Fv++++L ++D++v Sme2.5_02298.1_g00001.1 131 FCKVLTASDTSTHGGFSVLRKHANEClppldMSQPIPTQELIAKDLHDVEWHFKHIFRGQPRRHLLTTGWSTFVSSKKLVARDSFV 216 99****************************9555555669********************************************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F + ++++l+v+v r Sme2.5_02298.1_g00001.1 217 FL--RGEDGQLRVGVKR 231 **..4489999999865 PP | |||||||
2 | Auxin_resp | 90.3 | 3.4e-30 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ++ha++t+++F v Y+Pr+ s+F+v ++k+++a+++ +svGmRf+m+fe+e+ + rr++Gt+vgv dl++ +W+nS W sLk Sme2.5_02298.1_g00001.1 257 VSHAVTTQTMFVVNYKPRT--SQFIVGLNKYLEAVSHGYSVGMRFQMQFEGEENPDRRYMGTIVGVDDLSS-QWKNSAWWSLK 336 679***************6..9**********************************************777.*******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-36 | 122 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-37 | 124 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.05E-18 | 129 | 231 | No hit | No description |
PROSITE profile | PS50863 | 10.348 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-19 | 131 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-18 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.5E-28 | 257 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-13 | 561 | 658 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.35E-11 | 568 | 649 | No hit | No description |
PROSITE profile | PS51745 | 22.936 | 573 | 667 | IPR000270 | PB1 domain |
Pfam | PF03552 | 8.7E-49 | 717 | 911 | IPR005150 | Cellulose synthase |
SuperFamily | SSF53448 | 1.13E-10 | 786 | 910 | IPR029044 | Nucleotide-diphospho-sugar transferases |
Pfam | PF03552 | 4.9E-46 | 929 | 1200 | IPR005150 | Cellulose synthase |
SuperFamily | SSF53448 | 1.13E-10 | 960 | 1093 | IPR029044 | Nucleotide-diphospho-sugar transferases |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0030244 | Biological Process | cellulose biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1274 aa Download sequence Send to blast |
MANCNSNGCY QSQQKNNFSA QVRGKDHLYR ELWKLCAGPL VDVPKNGERV YYFPQGHMEQ 60 LEASINQEMN ERVPTFNLEP KILCSVIHID HLAEQDSDEV YARVILMPDG AKPAVPDPSP 120 PEPARPKGHS FCKVLTASDT STHGGFSVLR KHANECLPPL DMSQPIPTQE LIAKDLHDVE 180 WHFKHIFRGQ PRRHLLTTGW STFVSSKKLV ARDSFVFLRG EDGQLRVGVK RLGHQQSSMP 240 SSVISSQSMH LGVLATVSHA VTTQTMFVVN YKPRTSQFIV GLNKYLEAVS HGYSVGMRFQ 300 MQFEGEENPD RRYMGTIVGV DDLSSQWKNS AWWSLKVRWD EPALFPRPDR VSPWEIEPYM 360 SSITKVPGHP TAGKNKRKRT NNETKISGSN ENSQQQDPAS STALAVWSPS LDVPQFNASG 420 TNNSTHRTLT SHAEGGWLLP HLNTSGMLVD EKEDSKSASA WSGLTFVLTP QFAQGTNQPI 480 VSHADERKCD TITTCRLFGI NLKSSSMNTT EALLPPQSTD ISCVSAEREP PNTVPAGDSD 540 QKSDLSLDFI DQMLGHLQLP QKEVQSKQSC STRTRTKVQM QGVAVGRAVD LTALKGYDEL 600 TKELEEMFEI QGELHSRNKW EIVFTDDEGD TMLMGDYPWQ DFCNVVRRIF ICSTQDMKKL 660 TLSRADKRLL TTIISHSIIH SNNTTSSKTE TAAAAKTETA AAAMNSGGLH SVEVNRLQLM 720 YESMKIRIEK VIERGKVDED YINNEEELQA FTKFWTNGFT RNNHPSIIQV LLESGKDKDI 780 TSHGMPNLIY LSREKNKSCP HHFKAGALNA LLRVSGIMTN APIILTLDCD MYSNDPSTPH 840 RALCYFLDQT LSPNLAYVQF PQKFHGLNEA DIYASEIKGL FITNPIGMDG LCGPNYVGTG 900 CFFRRRAFFG SPSSFEQPEI PELFPDHVVN RPIKAQEILR RAHYVASCNY ESESDWGSKM 960 GFKYGSLVED YYTGYRLQCE GWKSVFCNPK RPAFLGDVPI SLCDVISQQK RWCVGLLEVG 1020 FSKYSPLTFG VKSMGFVMAH CYTHYAFWPI WSIPLTIYAF IPQLTLLNGV AIFPKVSDPW 1080 FFLYVFMFLG AYGQDCLVFI SYQGTFRRWW SDQRIWMIRG LTCCLFGTIE YLTKRLGIST 1140 QGFNITSKVV DNDQGKRYHQ GIFEFGVVSP MFMTLATTSI INLVAFLKSL AQIFNGEHPM 1200 FVTLATTSII NVVALLKSLA QILKGDQNLD ELFIQMFIAG FVVINCLPIY EAMVLRSDKG 1260 RMPTRVTIFS TFLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-151 | 26 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-151 | 26 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-151 | 26 | 361 | 17 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343828.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | M1AWK9 | 0.0 | M1AWK9_SOLTU; Auxin response factor | ||||
STRING | PGSC0003DMT400031965 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |