PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02290.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GATA

Protein Properties

Length: 867aa MW: 97026.5 Da PI: 7.871

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02290.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.6	1.1e-15	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Sme2.5_02290.1_g00006.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.4E-10	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.76E-11	4	45	No hit	No description
CDD	cd00202	1.77E-16	6	55	No hit	No description
Pfam	PF00320	1.7E-13	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.0E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	1.9E-8	285	364	IPR028020	ASX homology domain
SuperFamily	SSF103511	3.27E-10	742	815	IPR023329	Chlorophyll a/b binding protein domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH 60 RVSRLKNMSM KNKEAKVLKR KKNHDNAEVG TTPDYYLGFR KGLDEDTSNR SSSGSAVSNS 120 ESCAQFGSAE ASDLTGPAQS NIWDTTVPSR KRTCFNRPKP SSVEKLRKDL YTILHEQQSS 180 YLSASSEEEL LFESDKPMVS VEIGHGSVLI RHPSSIGREE ESEASSLSVE NKHRSVSDTY 240 SRLTTPPVNV NKGVNSPNVS TERTKKPTGL ALGQDQIRRN KDHLEKLQIL GHHNSPLRYI 300 DLKDVLNYDE FTSHFSSDEQ QQLLKYLPSV DSFAPPDSLR SVFESSQFEE NLFSFQKLLA 360 EGVFDNSLPG VKLEDCRTLK RFILCYLMKS KWVQQYNLLK DTICKNSSSS EVAGDPNVVG 420 TCHSANVKKP QEGQHPKCSG AKTAMKSPKR VVMKSIYEQK ELIDNDGSCF SPRSSFALPS 480 ENSSLVQDSF RSANENSHQD LLLDVPSNSY CPQAELLLPT SSFTTQASTS SSSMYPPHLG 540 WKWHGVRGCL TSIIMINDSS RRDLLLNSQK NFCCSILAGI EPLLSRLCYR KLWGSWNRRA 600 LILSFSSTMS ISLFSSPPPH FPSLSPPKPH LTHKPFLPLP FKKPHLPFLI SRKSIDDASS 660 SSSTAAVTIE QEKDVKDEGS NGVPLNSNGA SLAVAAGALA TETEEVRKFK DARWVAGTWD 720 LKQFEKDGKV HWDSVIDAEV RRRKWLEDNP ESSSNEEPVL FDTAIIPWWA WMKRFHLPEA 780 ERLNGRAAMI GFFMAYFVDS LTGVGLVDQM GNFFCKTLLF VAVAGVLLIR KNEDLETLKK 840 LLEETTFYDK QWQASWKDET SGNSKDS

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH  60
RVSRLKNMSM KNKEAKVLKR KKNHDNAEVG TTPDYYLGFR KGLDEDTSNR SSSGSAVSNS  120
ESCAQFGSAE ASDLTGPAQS NIWDTTVPSR KRTCFNRPKP SSVEKLRKDL YTILHEQQSS  180
YLSASSEEEL LFESDKPMVS VEIGHGSVLI RHPSSIGREE ESEASSLSVE NKHRSVSDTY  240
SRLTTPPVNV NKGVNSPNVS TERTKKPTGL ALGQDQIRRN KDHLEKLQIL GHHNSPLRYI  300
DLKDVLNYDE FTSHFSSDEQ QQLLKYLPSV DSFAPPDSLR SVFESSQFEE NLFSFQKLLA  360
EGVFDNSLPG VKLEDCRTLK RFILCYLMKS KWVQQYNLLK DTICKNSSSS EVAGDPNVVG  420
TCHSANVKKP QEGQHPKCSG AKTAMKSPKR VVMKSIYEQK ELIDNDGSCF SPRSSFALPS  480
ENSSLVQDSF RSANENSHQD LLLDVPSNSY CPQAELLLPT SSFTTQASTS SSSMYPPHLG  540
WKWHGVRGCL TSIIMINDSS RRDLLLNSQK NFCCSILAGI EPLLSRLCYR KLWGSWNRRA  600
LILSFSSTMS ISLFSSPPPH FPSLSPPKPH LTHKPFLPLP FKKPHLPFLI SRKSIDDASS  660
SSSTAAVTIE QEKDVKDEGS NGVPLNSNGA SLAVAAGALA TETEEVRKFK DARWVAGTWD  720
LKQFEKDGKV HWDSVIDAEV RRRKWLEDNP ESSSNEEPVL FDTAIIPWWA WMKRFHLPEA  780
ERLNGRAAMI GFFMAYFVDS LTGVGLVDQM GNFFCKTLLF VAVAGVLLIR KNEDLETLKK  840
LLEETTFYDK QWQASWKDET SGNSKDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-164	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	1e-164	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085711.1	0.0	GATA transcription factor 26-like isoform X1
Swissprot	Q8W4H1	1e-139	GAT26_ARATH; GATA transcription factor 26
TrEMBL	M1BTZ4	0.0	M1BTZ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400052800	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2089	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-131	GATA transcription factor 26