PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02281.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 284aa    MW: 31309.6 Da    PI: 8.6689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02281.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Sme2.5_02281.1_g00003.1 14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKSAGLSRCGKSCRLRWINYL 61
                             79********************************************97 PP
2Myb_DNA-binding58.91.1e-1867111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Sme2.5_02281.1_g00003.1  67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.685961IPR017930Myb domain
SMARTSM007172.7E-141363IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-3013108IPR009057Homeodomain-like
PfamPF002494.5E-161461IPR001005SANT/Myb domain
CDDcd001678.31E-111661No hitNo description
PROSITE profilePS5129428.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2865117IPR009057Homeodomain-like
SMARTSM007177.9E-1866114IPR001005SANT/Myb domain
PfamPF002496.6E-1767111IPR001005SANT/Myb domain
CDDcd001671.02E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKSAGLSRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHRPLN AASNSATTAV TTTTLSTTTT TKNINMDFQN NVDQNPNIAI ATSSSYDETK  180
CNSGTTTEET KPLEIIIPKI PSQVMINLEL SIGLPLQTDH ISSPESTASY NFLTTVAPPP  240
TAAVPAAEMV AKTGCLCWQI GFQGGVGGQC CGKCKNTTGF YRFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-159HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241841.11e-167myb-related protein 330
SwissprotP813951e-102MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A3Q7HS251e-166A0A3Q7HS25_SOLLC; Uncharacterized protein
STRINGSolyc06g065100.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-89myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]