PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02248.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18208.4 Da PI: 5.2552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.5e-20 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f tae+Aa+a++ a++ l+g+ Sme2.5_02248.1_g00002.1 12 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAEMAAAAYDSAALHLRGH 63 68*****999.**********8...557**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-22 | 12 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-37 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 14 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.66E-22 | 14 | 72 | No hit | No description |
Pfam | PF00847 | 3.3E-13 | 14 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEEGKRSGGI TSPYRGVRKR KWGKWVSEIR EPGKKTRIWL GSFETAEMAA AAYDSAALHL 60 RGHAAKLNFP ELVDHLPKPA SSSPEDIRLA AQEAALRVNT ANFIASTSHD HNVNVAPITI 120 GLSPSQIQAI NDFPMDSPTM WATQDTTFTC EMSDYEEMDD CLWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 14 | 74 | 6 | 67 | ATERF1 |
3gcc_A | 2e-18 | 14 | 74 | 6 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571655.1 | 5e-90 | PREDICTED: ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 2e-49 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A2G3CM24 | 5e-89 | A0A2G3CM24_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400045933 | 1e-84 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 2e-46 | ERF family protein |