PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02226.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 110aa MW: 12626.2 Da PI: 9.6586 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.4 | 1.1e-11 | 81 | 103 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+++fp s Sme2.5_02226.1_g00005.1 81 LDDGYRWRKYGQKAVKNNKFPSS 103 59*******************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.3E-13 | 66 | 103 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-10 | 73 | 103 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.323 | 76 | 103 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0016 | 81 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-8 | 82 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MENYQAIFPS STSSTSHHDE YFSLMNSKSS EDAQGKNKGF LGLMASMETR SGINEDEEKS 60 CKKKMKKPRF AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF PSSCPTTVMY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB061245 | 3e-53 | AB061245.1 Solanum tuberosum StWRKY mRNA for WRKY-type DNA binding protein, complete cds. | |||
GenBank | AJ278507 | 3e-53 | AJ278507.1 Solanum tuberosum mRNA for WRKY DNA binding protein (WRKY1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275604.1 | 3e-39 | probable WRKY transcription factor 75-like | ||||
TrEMBL | Q8H9D7 | 8e-38 | Q8H9D7_SOLTU; WRKY-type DNA binding protein | ||||
STRING | PGSC0003DMT400056352 | 1e-38 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 3e-20 | WRKY DNA-binding protein 75 |