PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02219.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 37006 Da PI: 5.0503 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 24 | 75 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a++ l+g+ Sme2.5_02219.1_g00004.1 24 PRYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75 68********.7*********....4456*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.94E-31 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 8.8E-14 | 24 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-36 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.89 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 25 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MKPPAPPPND GIRTRRKPSS RGHPRYVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED 60 AARAYDQAAR TLRGANARTN FELPASDSHQ GSCILENSQP FNFEEACRTE EPENGLVGAL 120 KAKLFNSSNS RSFIQAYASN STSQLTSKTK PSVPSLEIKK TFSQTEKLLK IGQGKNDSDN 180 LFRGNHNLDY ISLMTSDYQP MISSSQCQDN QWYSGTNSAI MWANEPWVEP QMSVVRDEVS 240 YGTTTNSNIN TDIFGGGNST TDTCTWPVSV SEPTVDLSSF GEVDVLNGPM MMPHMNGLTQ 300 TASVPTEQEF LQFENGLWGA GDNGAWDPFL LSSVLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 23 | 81 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | A0A2G3D147 | 0.0 | A0A2G3D147_CAPCH; Ethylene-responsive transcription factor LEP | ||||
STRING | PGSC0003DMT400014324 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-18 | related to AP2 11 |