PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02219.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 336aa    MW: 37006 Da    PI: 5.0503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02219.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-192475156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  Sme2.5_02219.1_g00004.1 24 PRYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75
                             68********.7*********....4456*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.94E-312482No hitNo description
PfamPF008478.8E-142474IPR001471AP2/ERF domain
SMARTSM003804.0E-362588IPR001471AP2/ERF domain
PROSITE profilePS5103220.892582IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-202583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-292582IPR001471AP2/ERF domain
PRINTSPR003673.3E-82637IPR001471AP2/ERF domain
PRINTSPR003673.3E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKPPAPPPND GIRTRRKPSS RGHPRYVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDQAAR TLRGANARTN FELPASDSHQ GSCILENSQP FNFEEACRTE EPENGLVGAL  120
KAKLFNSSNS RSFIQAYASN STSQLTSKTK PSVPSLEIKK TFSQTEKLLK IGQGKNDSDN  180
LFRGNHNLDY ISLMTSDYQP MISSSQCQDN QWYSGTNSAI MWANEPWVEP QMSVVRDEVS  240
YGTTTNSNIN TDIFGGGNST TDTCTWPVSV SEPTVDLSSF GEVDVLNGPM MMPHMNGLTQ  300
TASVPTEQEF LQFENGLWGA GDNGAWDPFL LSSVLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1623811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161747.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLA0A2G3D1470.0A0A2G3D147_CAPCH; Ethylene-responsive transcription factor LEP
STRINGPGSC0003DMT4000143240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11