PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02214.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 545aa    MW: 62405 Da    PI: 6.446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02214.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.74.9e-1041765413374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lL++cA+a+++ d + a++ L+ ++ ++sp+g++++R+ +yf+ AL+arla+++ ely a + ++ s    ++ l+a   f+++ 
  Sme2.5_02214.1_g00008.1 176 SLLTQCAQALANYDIRIAHEKLKLIRLHCSPYGEATERMSHYFADALEARLAGTGVELYTASARRTMS---AADILKA---FQHAH 255
                              79***************************************************999999665555555...6666666...44443 PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                                    ++ aN+ I + + +++ +Hii f+i++G+QWp+L+q ++ Rp+gpp+lRiTg++ p++g   +e++eetg+rLak+++++
  Sme2.5_02214.1_g00008.1 256 -SGGCLNIFANKSIGKLTREATSIHIINFGIMYGFQWPCLIQGISLRPSGPPKLRITGIDFPQPGfrPAERVEETGRRLAKYCKRF 340
                              .34457889*******************************************************9********************* PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              +vpfe+n+ +ak++++++le+L+++++E+l+Vn+ ++l ++lde+v  +s+rd+vL+l+k+++P+v+ +   + ++ns+ F++rf 
  Sme2.5_02214.1_g00008.1 341 NVPFEYNA-IAKKWDSIQLEDLKINSDEKLVVNCLYRLINVLDETVYENSPRDDVLRLIKQMKPDVFLHGIVNGSYNSTFFVTRFK 425
                              ********.7**************************************************************************** PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              eal ++s+lfd++ea++p e++ r+  E++++g+ei+n+vaceg++r+er e +++W+ r ++aGF+++pl ++++k++++ +++ 
  Sme2.5_02214.1_g00008.1 426 EALFHFSSLFDMMEATVPCENQSRVLFEKVIFGKEIMNIVACEGTARVERPEPYKQWQLRNQRAGFRQLPLHQEMVKEVRAKVQQQ 511
                              ************************************************************************************** PP

                     GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + + + v+e+  ++++gWk+r ++++S+Wr
  Sme2.5_02214.1_g00008.1 512 YHKDFLVDEDGYWMLQGWKGRVIYALSCWR 541
                              *888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.626148521IPR005202Transcription factor GRAS
PfamPF035141.7E-101176541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MESNNHSSLA CDYFDGVLDY INQMLMEEEE DLENRPCMLQ DSLALQATEK SFYDALSEDQ  60
QLIQHTCVNY CTEKGQKYPQ GYEDFSHSVE GETNNKRLAS CSEGLDQTQL YDKTLLCSSK  120
NPGFYSDPCC CQSTNDGSIE EQLAYKPLYF QPRMPKRGRP RAGAEQVVAN ALDLGSLLTQ  180
CAQALANYDI RIAHEKLKLI RLHCSPYGEA TERMSHYFAD ALEARLAGTG VELYTASARR  240
TMSAADILKA FQHAHSGGCL NIFANKSIGK LTREATSIHI INFGIMYGFQ WPCLIQGISL  300
RPSGPPKLRI TGIDFPQPGF RPAERVEETG RRLAKYCKRF NVPFEYNAIA KKWDSIQLED  360
LKINSDEKLV VNCLYRLINV LDETVYENSP RDDVLRLIKQ MKPDVFLHGI VNGSYNSTFF  420
VTRFKEALFH FSSLFDMMEA TVPCENQSRV LFEKVIFGKE IMNIVACEGT ARVERPEPYK  480
QWQLRNQRAG FRQLPLHQEM VKEVRAKVQQ QYHKDFLVDE DGYWMLQGWK GRVIYALSCW  540
RPVDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-451745415375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199023.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE581e-157SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8GYR00.0A0A1U8GYR0_CAPAN; LOW QUALITY PROTEIN: scarecrow-like protein 14
STRINGMigut.D02077.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-161GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]