PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02214.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 879aa    MW: 100675 Da    PI: 6.8979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02214.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.61.9e-1095058761373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+ v+++d + a + L+++++++ + gdp qRla++f+ +L+arla+++++ly+al+p++ +    +e+l+a++++  
  Sme2.5_02214.1_g00007.1 505 LRTLLVSCAQSVAADDRRTAYEQLKQIRQHCCSIGDPYQRLASVFADGLEARLAGTGTQLYAALAPKKIT---AAEKLKAYQVYLS 587
                              6789****************************************************************99...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k+s + aN++I   +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak++e
  Sme2.5_02214.1_g00007.1 588 ACPFKKISIFFANKMIFHTASNARTLHLIDFGILYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCE 673
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++v fe+n+++++++e++++e+L++ +gE+laVn+ ++  +llde+v l+s+rd++L l+++++P+++v +  + +++++ F++r
  Sme2.5_02214.1_g00007.1 674 RFKVLFEYNAIATQNWENIKIEDLKLVSGETLAVNCLFRFRNLLDETVMLDSPRDAILGLIRKMNPDIFVQAVINGSYSAPFFVTR 759
                              ***********999************************************************************************ PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s+lfd+++a+lpr++++r   E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++
  Sme2.5_02214.1_g00007.1 760 FREALFHFSTLFDMFDATLPRDDQQRLHFEQEFYRREVMNVIACEGFERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLRCKVK 845
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                + + + ++e+ +++++gWk+r + + S+W
  Sme2.5_02214.1_g00007.1 846 SGYHRDFVLDEDGQWMLQGWKGRVVCASSCW 876
                              *99999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.989479857IPR005202Transcription factor GRAS
PfamPF035146.6E-107505876IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MRMLRWMCGH SRSDKVRNET IREKLEVAPV ADKMREARLR WFGHVQRRSV DAPVRRRFIF  60
SWVGLIKAQP RLVCSNFTYV YPLHLFCPFS FLFKNKVRQR LPPLFVLSSL QFTLKIVLHA  120
TVMDPRFIPL PDPVNTFEFE DQINLSDFEG SMNLRQSYNN EYVASGVPYS APSVDIANFA  180
SSSNVSSEVD SPDDHDSDSL FKYLNQILME ENIEDRPSMF HDPLALKAAE KSLYEALGKT  240
YPPSPYRTPY YVDHQLESPS PDNIFQTSSD HSTSSSYAHS NSIDPHWIVD PGESKLPLPV  300
ESHPSEYSIQ PLLQSNSERF HGPLNDVNNL NVHMNSFLNP NVLSNMFTDR ESILQFRRGM  360
EEANKFLPNV SQFVVDLDKY TFPPKVEEVT KEAVVKVEKD ERNHSPNGSK GRKHQYPEDS  420
DFEEERSNKQ SAIYVEEEAE LSEMFDRVLL CTDKGETMCG ETVCGDIKSE MPVDKNLDQN  480
GQAHGSNGGK TRAKKQGTKN EAVDLRTLLV SCAQSVAADD RRTAYEQLKQ IRQHCCSIGD  540
PYQRLASVFA DGLEARLAGT GTQLYAALAP KKITAAEKLK AYQVYLSACP FKKISIFFAN  600
KMIFHTASNA RTLHLIDFGI LYGFQWPILI QLLSQIPGGP PKLRITGIDL PQPGFRPAES  660
LEQTGSRLAK YCERFKVLFE YNAIATQNWE NIKIEDLKLV SGETLAVNCL FRFRNLLDET  720
VMLDSPRDAI LGLIRKMNPD IFVQAVINGS YSAPFFVTRF REALFHFSTL FDMFDATLPR  780
DDQQRLHFEQ EFYRREVMNV IACEGFERVE RPETYKQWQV RNMRAGFKLL PLNQQLMQKL  840
RCKVKSGYHR DFVLDEDGQW MLQGWKGRVV CASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-424888781379Protein SCARECROW
5b3h_D6e-424888781379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241220.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CZ550.0M1CZ55_SOLTU; Uncharacterized protein
STRINGSolyc06g076280.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]