PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02191.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 141aa MW: 16331.5 Da PI: 7.094

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02191.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.5	1.1e-10	3	50	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++ r v+fskR+++++ A+ L a+v +i+fs++gk + y Sme2.5_02191.1_g00006.1 3 LIASQKDRDVSFSKRKKTLFQQAQKLANRARADVGIILFSPSGKPFSY 50 68999**************************************97666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.09E-16	1	74	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.381	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-4	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-14	4	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MKLIASQKDR DVSFSKRKKT LFQQAQKLAN RARADVGIIL FSPSGKPFSY GSTNIETIID 60 KYFDVKLEDH QRDYAQGKSH DWAELEDHRS EIPPDKHMEE QKLAIKLRLE KVLEDTRNAI 120 QAKHIKLDLN VDPKPEEEES S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771453.1	4e-55	MADS-box transcription factor 23-like
TrEMBL	M1DHK1	7e-51	M1DHK1_SOLTU; Uncharacterized protein
STRING	Solyc03g119680.1.1	7e-55	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	4e-17	AGAMOUS-like 29