PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02142.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 1034aa    MW: 114089 Da    PI: 5.0917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02142.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-183682148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Sme2.5_02142.1_g00008.1 36 KGQWTPEEDETLRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                             799****************************9.************986 PP
2Myb_DNA-binding64.32.3e-2088134148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W++eEde ++d+vk++G++ W+tIa++++ gR +kqc++rw+++l
  Sme2.5_02142.1_g00008.1  88 KGPWSKEEDEVIADLVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                              79******************************.*************97 PP
3Myb_DNA-binding48.12.7e-15140182145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + +WT+eE++ lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Sme2.5_02142.1_g00008.1 140 KEAWTQEEELTLVHAHRIYGNK-WAELTKFLP-GRTDNAIKNHWN 182
                              579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8963182IPR017930Myb domain
SuperFamilySSF466892.15E-183496IPR009057Homeodomain-like
SMARTSM007173.2E-153584IPR001005SANT/Myb domain
PfamPF002493.5E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-243899IPR009057Homeodomain-like
CDDcd001675.83E-143982No hitNo description
PROSITE profilePS5129432.47283138IPR017930Myb domain
SuperFamilySSF466897.86E-3185181IPR009057Homeodomain-like
SMARTSM007173.4E-1887136IPR001005SANT/Myb domain
PfamPF002493.4E-1888134IPR001005SANT/Myb domain
CDDcd001674.43E-1690134No hitNo description
Gene3DG3DSA:1.10.10.603.2E-27100141IPR009057Homeodomain-like
SMARTSM007174.3E-14139187IPR001005SANT/Myb domain
PROSITE profilePS5129419.507139189IPR017930Myb domain
PfamPF002493.6E-13140183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-21142189IPR009057Homeodomain-like
CDDcd001676.35E-11142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MESDRISTPS DGTSSSFQRV RPLHGRTSGP TRRSTKGQWT PEEDETLRKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIA DLVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEELT LVHAHRIYGN KWAELTKFLP GRTDNAIKNH  180
WNSSVKKKLD TFLASAPLAQ FPALPNVNQQ NQSVRSSIRL QQSSEDDSVR KEGTEMEEVS  240
ECSQGSNLAG CSQSTSDMGN TFAHTREEGK LLDDSNCRKD PSSSSAQCSE YYTPAFEDIT  300
FSMEEVPSEL AESKLLEHNF SHDWATSMGK DWQFNPDDIP NISPLELMQD SSGLFMQCLT  360
GTGNHDMVTL PQQNGMKFET TNDGNMVVGL HQPNEMFTCV DGYRMTYPEA EIPQCFPSET  420
GMNGLDETVG SLTYQISEGG NMSVEKCNPL CSDVMGTSSC QPCSVASQFS SEQSSLMFGT  480
ASNQFHNPSH PAHESQTSKC DGFPYPIESD SPCDNIMDDP LLKDQLDQTK DSVQLVSVND  540
FGSTPSNTVQ TCPLVNGNST VKEVQKDGGA LCYEPPRFPS LDIPFFSCDL IQSGTDTQQE  600
YSPLGIRQLM MTSVNCLTPF RLWDSPTRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP  660
LSEKRCGKKL ESDLRQESFS NLTKDFSRLD VMFDDSANEK AMSSLPKDQT LELQASSEDK  720
ENIDPTKDGQ KEDDKGRSGH SSCGTSGSQL YGGEVHYGTR EDKSLGADDT IGKIKQPSGV  780
LVELSASDLF FSPDRFGAKS DRATNLSNKA LGNQYAKRLE AASNHGSVSS SFETSCFSVI  840
CSPRIRGKDG SSFVITTSMQ SAPTSTAVEN SAETSGNGVG AETVNISGET PYKRSIESPS  900
AWKSPWIFTP FLSSPRFDNE LTFEDLALFM SPVDRSYDAI GLMKQLSEQT AGAFADAQEV  960
LGSDTPQSIL RGRNSKIQKA NENHSLLSAN TMSERRTLDF SECGSPAKGK EAEKCCTSNN  1020
NFSSPSSYLL KGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092960.0AP009296.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0018I16, complete sequence.
GenBankAP0094810.0AP009481.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0066I05, complete sequence.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085926.10.0transcription factor MYB3R-1-like
RefseqXP_015085927.10.0transcription factor MYB3R-1-like
TrEMBLA0A3Q7HRX50.0A0A3Q7HRX5_SOLLC; Uncharacterized protein
STRINGSolyc08g068320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-121Homeodomain-like protein