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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_02111.1_g00009.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 431aa MW: 48719.6 Da PI: 5.766 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_02111.1_g00009.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 302.5 | 1e-92 | 39 | 428 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86
++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL r a+ +++k l+++ +++++ ++ ++ l f++
Sme2.5_02111.1_g00009.1 39 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELASFVD 122
79****************************************************..666766666655544436666666677*** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169
++P+++f++ +aN aIleaveg + +Hi+Df++++++Q p+L++a+++R egpp +++T+ g+ e ++ee+g +L +fA
Sme2.5_02111.1_g00009.1 123 LTPWHRFGFTAANGAILEAVEGYSIIHIVDFSLTHCMQIPTLIDAISTRVEGPPIIKLTVAGATEDLppmLDLSYEELGAKLVNFA 208
***************************************************************776698888999*********** PP
GRAS 170 eelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrll..........desvsleserdevLklvk 232
++ +v +ef+v+ +++ +e+Lrv++ gEal++n++++lh+++ ++ +++s+r+ +Lk+++
Sme2.5_02111.1_g00009.1 209 RSRNVMMEFRVIpssssdgF----SNV-IEQLRVQNlirpenGEALVINCHMMLHYIPeettllsnrfTSECTSSSYRTMFLKAIR 289
***********977633333....333.66666666666678****************8888888877666677779********* PP
GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
+l P++vv+v+++ad +s++++ r+ +a++y + +d++++ lpr s++r ++E+ + ++i+nv+a+eg +r er e +++W +r
Sme2.5_02111.1_g00009.1 290 NLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRLWYEAD-ICWKIENVIAQEGVQRLERLEPKSQWVQR 374
********************************************************.***************************** PP
GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++a F++ +se+ +++k +l +++ g+ ++ +++ lvl+Wk++++v+++ W
Sme2.5_02111.1_g00009.1 375 MRNANFRSSGFSEEGITEVKNMLDEHA-AGWGLKRDEEDLVLTWKGHNVVFATNW 428
***************************.999************************ PP
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Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MMNKNTTSTN NNQIQHARPW PGFHTSKNLG NIGDTNCMEQ LLVHCANAIE SNDATLAQQI 60 LWVLNNIAPP DGDSNQRLTC GFLRALIVRA AKIGTCKLLT ANLNHSMETH KFSIIELASF 120 VDLTPWHRFG FTAANGAILE AVEGYSIIHI VDFSLTHCMQ IPTLIDAIST RVEGPPIIKL 180 TVAGATEDLP PMLDLSYEEL GAKLVNFARS RNVMMEFRVI PSSSSDGFSN VIEQLRVQNL 240 IRPENGEALV INCHMMLHYI PEETTLLSNR FTSECTSSSY RTMFLKAIRN LDPTIVVLVD 300 EDADFTSNNL VCRLRSAFNY LWIPYDTVDT FLPRGSKQRL WYEADICWKI ENVIAQEGVQ 360 RLERLEPKSQ WVQRMRNANF RSSGFSEEGI TEVKNMLDEH AAGWGLKRDE EDLVLTWKGH 420 NVVFATNWVP F
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |