PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02111.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 431aa    MW: 48719.6 Da    PI: 5.766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02111.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.51e-92394282373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86 
                              ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f++
  Sme2.5_02111.1_g00009.1  39 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELASFVD 122
                              79****************************************************..666766666655544436666666677*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169
                              ++P+++f++ +aN aIleaveg + +Hi+Df++++++Q p+L++a+++R egpp +++T+ g+ e        ++ee+g +L +fA
  Sme2.5_02111.1_g00009.1 123 LTPWHRFGFTAANGAILEAVEGYSIIHIVDFSLTHCMQIPTLIDAISTRVEGPPIIKLTVAGATEDLppmLDLSYEELGAKLVNFA 208
                              ***************************************************************776698888999*********** PP

                     GRAS 170 eelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrll..........desvsleserdevLklvk 232
                              ++ +v +ef+v+            +++ +e+Lrv++      gEal++n++++lh+++           ++ +++s+r+ +Lk+++
  Sme2.5_02111.1_g00009.1 209 RSRNVMMEFRVIpssssdgF----SNV-IEQLRVQNlirpenGEALVINCHMMLHYIPeettllsnrfTSECTSSSYRTMFLKAIR 289
                              ***********977633333....333.66666666666678****************8888888877666677779********* PP

                     GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                              +l P++vv+v+++ad +s++++ r+ +a++y +  +d++++ lpr s++r ++E+  + ++i+nv+a+eg +r er e +++W +r
  Sme2.5_02111.1_g00009.1 290 NLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRLWYEAD-ICWKIENVIAQEGVQRLERLEPKSQWVQR 374
                              ********************************************************.***************************** PP

                     GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +++a F++  +se+  +++k +l +++  g+ ++ +++ lvl+Wk++++v+++ W
  Sme2.5_02111.1_g00009.1 375 MRNANFRSSGFSEEGITEVKNMLDEHA-AGWGLKRDEEDLVLTWKGHNVVFATNW 428
                              ***************************.999************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.2912410IPR005202Transcription factor GRAS
PfamPF035143.6E-9039428IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MMNKNTTSTN NNQIQHARPW PGFHTSKNLG NIGDTNCMEQ LLVHCANAIE SNDATLAQQI  60
LWVLNNIAPP DGDSNQRLTC GFLRALIVRA AKIGTCKLLT ANLNHSMETH KFSIIELASF  120
VDLTPWHRFG FTAANGAILE AVEGYSIIHI VDFSLTHCMQ IPTLIDAIST RVEGPPIIKL  180
TVAGATEDLP PMLDLSYEEL GAKLVNFARS RNVMMEFRVI PSSSSDGFSN VIEQLRVQNL  240
IRPENGEALV INCHMMLHYI PEETTLLSNR FTSECTSSSY RTMFLKAIRN LDPTIVVLVD  300
EDADFTSNNL VCRLRSAFNY LWIPYDTVDT FLPRGSKQRL WYEADICWKI ENVIAQEGVQ  360
RLERLEPKSQ WVQRMRNANF RSSGFSEEGI TEVKNMLDEH AAGWGLKRDE EDLVLTWKGH  420
NVVFATNWVP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-483943034420Protein SHORT-ROOT
5b3h_E2e-483943034420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560964.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-177SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8FZ100.0A0A1U8FZ10_CAPAN; Scarecrow-like protein 32
TrEMBLA0A2G3AB420.0A0A2G3AB42_CAPAN; scarecrow-like protein 32
STRINGSolyc02g092570.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein