PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02075.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 37157.6 Da PI: 4.9872 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l + + G +W++ ++ g+ R++k+c++rw +yl Sme2.5_02075.1_g00004.1 14 KGPWSSEEDKKLSNFILNNGQCCWRSLPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Sme2.5_02075.1_g00004.1 71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 6779**************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.746 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.76E-25 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.54E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.609 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-10 | 74 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRQPCCDKN EVKKGPWSSE EDKKLSNFIL NNGQCCWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPITHEPID SDQTTKNQSI IQQEKQASIE TKSKSEQEEN KNIGTTTTTI MSQFQTNLGR 180 QENQNIGTMP LTTTTIMPQF QINLDQQENE NIGISPKNIN SIEVNNNGFC TTEIPVISPN 240 EILILDQSTT PSTSSISSQS SNMILEDLQF LPSFDNWQCD FNMEISWKDD DFSSTLDYLL 300 NDDDISDINN NNNNISQEWS QVLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346756.1 | 1e-147 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | A0A2G3CDK8 | 1e-145 | A0A2G3CDK8_CAPCH; Protein ODORANT1 | ||||
STRING | Solyc04g014470.2.1 | 1e-144 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 3e-85 | myb domain protein 43 |