PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02075.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 325aa    MW: 37157.6 Da    PI: 4.9872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02075.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-131461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+ eEd++l + +   G  +W++ ++  g+ R++k+c++rw +yl
  Sme2.5_02075.1_g00004.1 14 KGPWSSEEDKKLSNFILNNGQCCWRSLPKLAGLLRCGKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding51.22.9e-1671111547
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Sme2.5_02075.1_g00004.1  71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                              6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19563IPR009057Homeodomain-like
PROSITE profilePS5129411.746961IPR017930Myb domain
SuperFamilySSF466897.76E-2512108IPR009057Homeodomain-like
SMARTSM007174.2E-91363IPR001005SANT/Myb domain
PfamPF002498.4E-121461IPR001005SANT/Myb domain
CDDcd001674.54E-61661No hitNo description
PROSITE profilePS5129425.60962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2464117IPR009057Homeodomain-like
SMARTSM007173.8E-1466114IPR001005SANT/Myb domain
PfamPF002494.8E-1471111IPR001005SANT/Myb domain
CDDcd001671.69E-1074112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRQPCCDKN EVKKGPWSSE EDKKLSNFIL NNGQCCWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPITHEPID SDQTTKNQSI IQQEKQASIE TKSKSEQEEN KNIGTTTTTI MSQFQTNLGR  180
QENQNIGTMP LTTTTIMPQF QINLDQQENE NIGISPKNIN SIEVNNNGFC TTEIPVISPN  240
EILILDQSTT PSTSSISSQS SNMILEDLQF LPSFDNWQCD FNMEISWKDD DFSSTLDYLL  300
NDDDISDINN NNNNISQEWS QVLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346756.11e-147PREDICTED: protein ODORANT1-like
TrEMBLA0A2G3CDK81e-145A0A2G3CDK8_CAPCH; Protein ODORANT1
STRINGSolyc04g014470.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-85myb domain protein 43