PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02032.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 212aa    MW: 25201.4 Da    PI: 4.7314
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02032.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-16877148
                             TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed +l+ +v+++G +                       +W++Iar+++ gRt++++k++w++++
  Sme2.5_02032.1_g00006.1  8 KGPWTEQEDVQLAFYVNMFGDRrwdflakvsefltelyvfldvliRWSRIAREVP-GRTDNEIKNYWRTHM 77
                             79*****************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.49381IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-18481IPR009057Homeodomain-like
SMARTSM007175.1E-12779IPR001005SANT/Myb domain
PfamPF002499.0E-14876IPR001005SANT/Myb domain
SuperFamilySSF466891.84E-11878IPR009057Homeodomain-like
CDDcd001672.81E-71077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSQEEMRKGP WTEQEDVQLA FYVNMFGDRR WDFLAKVSEF LTELYVFLDV LIRWSRIARE  60
VPGRTDNEIK NYWRTHMRKK VQDERRNKGS IISPSSSFSN SSSSSSNSPS VDFTRIKENN  120
ERNFYDTGGL QKKVLDHEKG KNMKVYSMDE IWKDIELSEE NETMCEPIMP SPIWDYCPNT  180
LWMSDEEETK MFPMFYCLEN QDNTFLPKGL FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-128HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366918.12e-97PREDICTED: transcription factor MYB48-like
TrEMBLA0A3Q7GNQ58e-88A0A3Q7GNQ5_SOLLC; Uncharacterized protein
STRINGSolyc06g005330.2.11e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-37myb domain protein 48