PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02014.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22846.7 Da PI: 9.6545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 114 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrdps k r++lg+f+t +Aa+a++ a+ k++g Sme2.5_02014.1_g00008.1 114 NYRGVRKRP-WGKFAAEIRDPSR--KGSRIWLGTFDTDMDAARAYDCAAFKMRG 164 59*******.**********854..34**********88*************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.11E-31 | 113 | 172 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-32 | 114 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 114 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-12 | 114 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 114 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.5 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-13 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-13 | 154 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MARQDEGLTL ELIRKHLLED FTTTESFINS LNSCFSDDIS PVFTSVKTEP STSNSLSDSP 60 NSSYPNEPNS PISRYFNLHS DFPEFKIDSD TIFTQVSDGS AESNESDKKN KKKNYRGVRK 120 RPWGKFAAEI RDPSRKGSRI WLGTFDTDMD AARAYDCAAF KMRGRKAILN FPLDAGKAGA 180 PANIGRKRRR ENKMELMKML NV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 111 | 173 | 2 | 64 | ATERF1 |
3gcc_A | 1e-28 | 111 | 173 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 107 | 121 | KKNKKKNYRGVRKRP |
2 | 185 | 189 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY192370 | 0.0 | AY192370.1 Lycopersicon esculentum ethylene response factor 4 (ERF4) mRNA, complete cds. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365343.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | M1BB76 | 1e-126 | M1BB76_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041328 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 6e-45 | ERF family protein |