PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01979.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 293aa    MW: 32263.2 Da    PI: 9.9376
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01979.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.22.1e-203583250
                   RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                             +k++s++++sk F+lp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk+ 
  Sme2.5_01979.1_g00009.1 35 SKSLSFDQVSKLFNLPLSDAAESLGVCASVLKKICYENGLVRWPYRKVI 83
                             589********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.97120105IPR003035RWP-RK domain
PfamPF020423.2E-183882IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSNLQGLAPS SNPIQIPNSN PNPNPNPNPK PITDSKSLSF DQVSKLFNLP LSDAAESLGV  60
CASVLKKICY ENGLVRWPYR KVISGKSIDD IKKEALREKQ ERSVEFPKAP GEKNDSLASS  120
AILSFSGSPS PIKSISSLTE MPRAGAFSQQ QGTRNFQSGS SPHFRISNLT KGASVNYDEF  180
KYGFPSNGLS TTTYRWWGNK SPDGDQDIKL NDDNAKNSAE QTDDVADKSE CQTSVDSMGT  240
SLLTNVRKRA VKEGKETLKL GVYRLRNANK LDSTKRKILR QVFKSYLHVH GDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-169HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350003.11e-163PREDICTED: uncharacterized protein LOC102590780 isoform X1
TrEMBLA0A0V0HW321e-162A0A0V0HW32_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000202961e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.19e-10NIN like protein 7