PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01913.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 598aa    MW: 65649.1 Da    PI: 6.9848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01913.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.95.6e-1052295972373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++ ++e+A+a+++g+++ a +lL+rl + a  +g++ qRl+ay++ AL++r+++    +    p+ e    +s+e++ + + ++e+
  Sme2.5_01913.1_g00001.1 229 KQSIVEAATAITDGKTNVAVHLLTRLAQVADVKGSSEQRLTAYMVSALRSRVNS----VEYPPPVLEL---HSKEHAISAQNLYEI 307
                              7889*************************************************9....3333344444...48999999999**** PP

                     GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfA 169
                              sP++k+++++aN aI+eav+ +  +++H iDfdi+qG+Q++ Ll+aLa+++ ++p+sl+iT++  + +g   e++e++g  L+ +A
  Sme2.5_01913.1_g00001.1 308 SPCFKLGFMAANLAIVEAVADHpsNKIHLIDFDIGQGGQYLHLLHALAAKKtDNPASLKITAITIEFTGrIDEKVESIGADLRTLA 393
                              ********************9999************************77747777********987778999************* PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                              ++lgvp+ fnv ++ +++dl+ e+L v+++EalaVn++++l+rl+desv++++ rde+L+ vk+lsPkvv++veqe++ n++ F++
  Sme2.5_01913.1_g00001.1 394 NKLGVPLIFNV-TSCTITDLSREKLGVEHDEALAVNFAYRLYRLPDESVTTDNLRDELLRRVKGLSPKVVTLVEQELNGNTSAFVA 478
                              **********9.899*********************************************************************** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              r+ ea+ yy al+dsl+a+++r++  r+k+E+  l+r+i n vaceg++r+er+e ++kWr+r+++aGF+p p+++++a++    l
  Sme2.5_01913.1_g00001.1 479 RVNEACGYYGALLDSLDATVSRDETGRVKIEEG-LNRKIANTVACEGRDRVERCEVFGKWRARMSMAGFGPRPMGQRIADSLFKKL 563
                              *********************************.*******************************************999987777 PP

                     GRAS 342 rkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +  +  + g++v+e++g + +gW++++L+++SaW
  Sme2.5_01913.1_g00001.1 564 NPGPrgNPGFNVNEQNGGIHFGWMGKTLIVASAW 597
                              765546899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.572202576IPR005202Transcription factor GRAS
PfamPF035141.9E-102229597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSDFSGGVP DFYGGVSGRS NLIPMNNPQS QIQFPYRSLI LPDSASQNLH RRSSFIGKRS  60
LAEFQQQQQF QQGLGFYLRN VKPRSYRQSS PISPLSHVDF SVSSVFSPIP TNSTMTTNSI  120
LPMVRSQPVI SVANNNGSPN CSAVASYLNQ VQNSLYQESE EKMMNRLHEL EKQLLEDNNE  180
DTVSVVTNND EWSETIKNLI TPTDNHLSPA SSTSSCSSSI ESPPVSSLKQ SIVEAATAIT  240
DGKTNVAVHL LTRLAQVADV KGSSEQRLTA YMVSALRSRV NSVEYPPPVL ELHSKEHAIS  300
AQNLYEISPC FKLGFMAANL AIVEAVADHP SNKIHLIDFD IGQGGQYLHL LHALAAKKTD  360
NPASLKITAI TIEFTGRIDE KVESIGADLR TLANKLGVPL IFNVTSCTIT DLSREKLGVE  420
HDEALAVNFA YRLYRLPDES VTTDNLRDEL LRRVKGLSPK VVTLVEQELN GNTSAFVARV  480
NEACGYYGAL LDSLDATVSR DETGRVKIEE GLNRKIANTV ACEGRDRVER CEVFGKWRAR  540
MSMAGFGPRP MGQRIADSLF KKLNPGPRGN PGFNVNEQNG GIHFGWMGKT LIVASAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-392305976374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363331.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM1CXM00.0M1CXM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-139SCARECROW-like 8