PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01898.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21005.5 Da PI: 9.7102 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.5 | 3.9e-14 | 17 | 64 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +ykGVr + +g++ A I+d s +r+ ++lg+f+taeeAa+a++ a++++ Sme2.5_01898.1_g00010.1 17 RYKGVRKLS-QGSYSAVIKDSS---QRRFVRLGTFDTAEEAARAYDTAARRY 64 59****877.9*********43...36**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 17 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-14 | 17 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.19E-18 | 17 | 76 | No hit | No description |
PROSITE profile | PS51032 | 15.83 | 17 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-7 | 17 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-17 | 17 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MTPKINNNAV VSSNEIRYKG VRKLSQGSYS AVIKDSSQRR FVRLGTFDTA EEAARAYDTA 60 ARRYLHPKTI INFPPATDHD NVKRTINYLS KLNGRNTINI DSNNNIGSSS RSGDDVVTFP 120 MPNQNPDHEF RRFTTITGAS VVMSMVRDKN LVEGLMREGL LFPNSEIAAN DGNSSEPLNL 180 ELSLAPPGSM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161234.1 | 1e-62 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
TrEMBL | M1C9G2 | 3e-61 | M1C9G2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400062721 | 5e-62 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18488 | 4 | 4 |