PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01876.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 733aa    MW: 84617 Da    PI: 8.0372
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01876.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.81.5e-1558062852100
                    NF-YC  52 elfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                               +fileltl swl +een+r+tl+k  +++a+ rtd+f+fl+d+vp d+
  Sme2.5_01876.1_g00001.1 580 SFFILELTLHSWLYSEENQRHTLQKDHLTSAIPRTDTFNFLLDVVPGDD 628
                              68********************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.2704.9E-691250No hitNo description
SuperFamilySSF566722.49E-34142256No hitNo description
CDDcd016473.91E-39143252No hitNo description
PfamPF000786.2E-11176251IPR000477Reverse transcriptase domain
PROSITE profilePS5099412.917273428IPR001584Integrase, catalytic core
SuperFamilySSF530981.1E-26298422IPR012337Ribonuclease H-like domain
PfamPF006657.4E-8299385IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.101.7E-21299430IPR012337Ribonuclease H-like domain
Gene3DG3DSA:1.10.20.101.3E-10572625IPR009072Histone-fold
SuperFamilySSF471134.19E-9573625IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSSAALPAGS HKRGTTTGTI GGTNLLYAMG NLQDQETAPD VVTAWTDFMP VMPPLINGSA  60
SSLVKKGKEK QDQDPVLLQL KEVVHKQKMY HNLREVYWWN GMKKDIAEFV SWYPNCQYPA  120
LVTKLQVASQ LCMSRAYVLY CTGASSFSKI DLRWDYYQLK VTECDIPKTA FRTSLTNSPA  180
AFMDLTNKVF RLYLDMFVIV FIDDILVYSK DEEEHANHLR VVLQTLKDHE LYAKFLKCEF  240
WLKFVAFLGH VVLGDGKANI VADVLSKLFM GSTAHVEEGK KELAKEVHRL RLSIKGLRDK  300
MTKSAHFLAV KTTNTTEKYT KLYIHEIVRL HGVPLSIILD RGAQFTSQCW RSFQKGLGTK  360
VNLSTAFHPQ TDGQAKCIIQ TLEDMLRAFV LEFKGNWDNY FPFIEFDYNN SYHASIQMTF  420
YEALYGRRCR SSIGWFEVGK AELIGPDLVH QSMEKVKVIR ESLKTTQSHQ KSYTDVRKKD  480
LKFEVDDWMY LKVSPMKGVV RFGKKEKLSP RYIGPYQIVR RIEKVTYELD LSLVLDKIHL  540
VFHILMLKKC LRDLALAIPI ERMSIWSLLN HPFCLLILVS FFILELTLHS WLYSEENQRH  600
TLQKDHLTSA IPRTDTFNFL LDVVPGDDGD DITERSTTSC VPFDGSDIFY TWEILKDKED  660
IDPKSKFVIL KLIEKLNELE NLVESSQILA NKFEKLIRAS EEVDKPRDFN PEDNCLDMKL  720
RKLEEKVEKL KES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022007202.11e-129uncharacterized protein LOC110906365
TrEMBLQ6L3S21e-126Q6L3S2_SOLDE; Putative retrotransposon protein, identical
STRINGXP_004506381.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-10nuclear factor Y, subunit C1