PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01843.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 1030aa    MW: 116146 Da    PI: 6.7872
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01843.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.63.2e-11565610281374
                     GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84  
                               l++l+++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +++arla+++s++ykal  ++ts    ++ l+a++l+
  Sme2.5_01843.1_g00008.1  656 LRTLMITCAQAVAADDSRTANELLKQIRQHSSPFGDGNQRLAHCFADGIEARLAGTGSQIYKALVNKRTS---AADLLKAYHLY 736 
                               57899***********************************************************999998...9********** PP

                     GRAS   85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 
                                  sP+ k+s ++ N++I+  +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++eetg+rLa
  Sme2.5_01843.1_g00008.1  737 LASSPFRKISSFASNKTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPRLRITGIEFPQPGfrPAEQIEETGHRLA 820 
                               ********************************************************************9*************** PP

                     GRAS  167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 
                               ++A++++vpfe+++ +ak++e++++e+L+++++E laVn+ ++ ++l+de+ ++es+r+ vL+l+++++P+++v+   +  +++
  Sme2.5_01843.1_g00008.1  821 DYARSFNVPFEYHA-IAKKWETITVEDLKLDKDEFLAVNCLYRFKNLHDETIAVESPRTVVLNLIRKINPDIFVHGIVNGAYSA 903 
                               **************.7******************************************************************** PP

                     GRAS  251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.a 333 
                               + F++rf eal ++salfd+le+ +pre  er+ +Ere++gre+ nv+aceg er+er et+++W++r+  a F+++p++ +  
  Sme2.5_01843.1_g00008.1  904 PFFVTRFREALFHFSALFDMLETVVPREIPERRLIEREIFGREALNVIACEGWERVERPETYRQWQARILGARFTQIPFDREeF 987 
                               ******************************************************************************975414 PP

                     GRAS  334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                               +++a   +rk + + + ++e+s++l+lgWk+r+++++S+W+
  Sme2.5_01843.1_g00008.1  988 VNKAVEKVRKGYHRDFVIDEDSQWLLLGWKGRTIYALSCWK 1028
                               566777777777688*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.6556301007IPR005202Transcription factor GRAS
PfamPF035141.1E-1126561028IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MAVVAFSLPQ VFANLSLKFP TSLTGCSRIQ RVRNIIDGKT LSFGVSCEML ELFGLLPLKG  60
SLSLYLKMKH HRHAMNDINS KGFLLANGAS EDNKILKFNY PGIEILVLKS GSWRENIKCQ  120
AGFEPFLSHP VDSFAFLHGA LHWLVQYEIF LWFHLVFQMK CTERYTLLEP MLEKDYGVKE  180
SWTQPIYMFA DGEVLLLNYR CIDQASCSAI GPPGDLVGLI ADGWCILWSR RLPEALVGLV  240
MDRLKLLQGL LWTASCGAAK PPEALAGLVR DSVTNRGLTS KTVEIVCFLL LGPYQSTRCP  300
AMPSDHLRLL SGSLRMGRYH KLQNGPRHEN CFVQHNFGAV GFMSGDHLRT NIESRTELCV  360
DDDFNEDIDF TDAVLSYINQ MLMEEDMEDK SDMLQESLEL QAKEKSLYEA LGKNYPPSPE  420
KNMFTDRNSE NPDDYFAGSI YNSTSNTGDG SGYLVDSRGV NMSTDCNSSY FEGLSFHNTS  480
YSSVCSSNSG SNVVDGFLDS PVSSFHIPST YDESQSILNF QKGVEEASKF LPTSNKLLNS  540
VDTNDLPPRE PKRQAGKAAA QMEEKDEGET SSTEARGKKN PLRGDNYIEE ERSSKQAAEF  600
DIVLLNSMGK GGEALEAYQK NLRNAKSKTT MQISKGSKGG KARGKKQGEK KEFIDLRTLM  660
ITCAQAVAAD DSRTANELLK QIRQHSSPFG DGNQRLAHCF ADGIEARLAG TGSQIYKALV  720
NKRTSAADLL KAYHLYLASS PFRKISSFAS NKTIMIKAEN ATRVHVIDFG ILYGFQWPTF  780
IQRIAEREGG PPRLRITGIE FPQPGFRPAE QIEETGHRLA DYARSFNVPF EYHAIAKKWE  840
TITVEDLKLD KDEFLAVNCL YRFKNLHDET IAVESPRTVV LNLIRKINPD IFVHGIVNGA  900
YSAPFFVTRF REALFHFSAL FDMLETVVPR EIPERRLIER EIFGREALNV IACEGWERVE  960
RPETYRQWQA RILGARFTQI PFDREEFVNK AVEKVRKGYH RDFVIDEDSQ WLLLGWKGRT  1020
IYALSCWKPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4863910291379Protein SCARECROW
5b3h_D2e-4863910291379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341017.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLM1AHK30.0M1AHK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000229970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein