PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01808.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 522aa MW: 57238.6 Da PI: 5.7813 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.2e-09 | 343 | 391 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sme2.5_01808.1_g00003.1 343 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 391 58*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.67E-11 | 338 | 395 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-17 | 338 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.497 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-17 | 341 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 343 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-10 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MGSKNDTEQQ KRNKDAVNFQ SPNMSMNWQL SGNNLTNLSM VMIPNSNPLV DSNFPPIWDR 60 PTTLPPLSFY GNSAQINPCT MNQHQTATIG SDPARGGMNW NPPNAMLKGA MLVPPIPGTI 120 PQSLAQLPAD SGFIERAARF SCFSGGNFSD IMNSFSVPEY SKPCNRAPTP TWRTEEVFAS 180 NELNSPSIVG SRKQNMQSGV NNSSKDVSLP NENRANEQSP LMNQKKNEGK ESVGLSGNES 240 DEAECSGRQE EMGSTGLESF AKDLGSRKRK GYGQDTELDR MKGAQQLPAK PEEEQTETQK 300 GDVSLNSPSS KHGGKNSKQK SQSSDPPKEE YIHVRARRGQ ATNSHSLAER VRREKISERM 360 KFLQDLVPGC DKVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF NLDGLLGKDS 420 QAGPSSSLTF PPDNMTMTYT SLHGWQSGML QPGFPGDVDA FRRSINSQFT SMSGGYRDPS 480 SQAPNVWDAQ LHNVVDMGFN STAPLDSQDL SSVPPDQMKA EP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-164 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367876.1 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
Refseq | XP_006367877.1 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
Refseq | XP_015161226.1 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
Refseq | XP_015161227.1 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
TrEMBL | A0A0V0IT85 | 0.0 | A0A0V0IT85_SOLCH; Putative transcription factor bHLH49-like | ||||
STRING | PGSC0003DMT400022704 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2871 | 21 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-92 | bHLH family protein |