PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01766.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 490aa    MW: 54248.2 Da    PI: 5.638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01766.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-162572148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WTt Ed +l ++v+++G g+W+++ r  g+ R++k+c++rw ++l
  Sme2.5_01766.1_g00003.1 25 KGPWTTTEDAILMEYVNKYGEGNWNAVQRNSGLMRCGKSCRLRWANHL 72
                             79******************************************9986 PP
2Myb_DNA-binding48.61.9e-1578121146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g+++ eE+  ++d++++lG++ W++ a+ ++ gRt++++k++w++
  Sme2.5_01766.1_g00003.1  78 KGAFSSEEERTIIDLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 121
                              799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3562072IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-232075IPR009057Homeodomain-like
SuperFamilySSF466893.95E-2923119IPR009057Homeodomain-like
SMARTSM007171.8E-122474IPR001005SANT/Myb domain
PfamPF002492.6E-142572IPR001005SANT/Myb domain
CDDcd001673.42E-102772No hitNo description
PROSITE profilePS5129424.33573127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2476126IPR009057Homeodomain-like
SMARTSM007177.1E-1577125IPR001005SANT/Myb domain
PfamPF002494.6E-1478121IPR001005SANT/Myb domain
CDDcd001671.77E-1080123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAPDDRGMKN GGGRSGGVNR QALKKGPWTT TEDAILMEYV NKYGEGNWNA VQRNSGLMRC  60
GKSCRLRWAN HLRPHLKKGA FSSEEERTII DLHAKLGNKW ARMAAQLPGR TDNEIKNYWN  120
TRLKRRQRAG LPIYPQELQS QNQQESNQPQ SLISSPFDPL RAAYGNTPSF PLLNTFNPST  180
MKPPQFPLNS NTIFGDLPRG LSLTLPSAMI NSHILPTPAS IADSHVLSNL IPVSPFQQNY  240
LNFSSTTRPF MRIPLNQNEL ISGVDINSIN YPSGRSLMTT SSSENTCSDF GSSDANNYAN  300
VVGLSRGNSG LLEDLLEEAQ TLSQSTKIEE NTHLDLNEKG KSLWEDYGLV EKGEGDHQDK  360
AILTEESVYN FAHGGDVILN NNSESSSPDP NASSGMFLRK EGSLQGINPM DEELMFFLDN  420
FPLAHEPVLN WYDESDDKNN NSKIGNDDHK AESLAGDSSK SQATVTTTSG PKKHDWELGG  480
CCWNNMPSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29231265107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366585.10.0PREDICTED: transcription factor RAX3
TrEMBLM1CTR20.0M1CTR2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000744860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.26e-68myb domain protein 101