PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01759.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 1068aa    MW: 119065 Da    PI: 5.0937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01759.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-184993348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              WT+eEde+l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Sme2.5_01759.1_g00005.1 49 QWTPEEDEILRHAVQQFKGKSWKKIAECFK-DRTDVQCLHRWQKVL 93
                             6****************************9.************986 PP
2Myb_DNA-binding551.8e-1799145148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W++eEd++l+++v+ +G++ W+ Ia+++  gR +kqc++rw+++l
  Sme2.5_01759.1_g00005.1  99 KGSWSKEEDDKLINLVNIHGPKKWSIIAQELA-GRIGKQCRERWHNHL 145
                              799*****************************.*************97 PP
3Myb_DNA-binding40.65.8e-13151199145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 
                              + +WT+eE++ l++a++  G++ W+  +++++     k R+++ +k++w+
  Sme2.5_01759.1_g00005.1 151 KEAWTEEEELTLIRAHEACGNK-WAELSKYLPgsvlsKFRSDNAIKNHWH 199
                              579*******************.**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-154299IPR009057Homeodomain-like
PROSITE profilePS5129418.8564293IPR017930Myb domain
SMARTSM007174.4E-144695IPR001005SANT/Myb domain
PfamPF002493.4E-154993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-1949103IPR009057Homeodomain-like
CDDcd001671.32E-135093No hitNo description
PROSITE profilePS5129430.06994149IPR017930Myb domain
SMARTSM007171.6E-1798147IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2598198IPR009057Homeodomain-like
PfamPF002492.1E-1699145IPR001005SANT/Myb domain
CDDcd001673.00E-15101145No hitNo description
Gene3DG3DSA:1.10.10.601.4E-25104152IPR009057Homeodomain-like
SMARTSM007178.0E-13150204IPR001005SANT/Myb domain
PROSITE profilePS5129414.845150206IPR017930Myb domain
PfamPF002492.2E-11151199IPR001005SANT/Myb domain
CDDcd001679.39E-9153199No hitNo description
Gene3DG3DSA:1.10.10.609.8E-18153205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MLDYQDLPLS QATMESEETS KSPSDDISSL QSVPPLHGRT SGPKRRSRQW TPEEDEILRH  60
AVQQFKGKSW KKIAECFKDR TDVQCLHRWQ KVLDPVLVKG SWSKEEDDKL INLVNIHGPK  120
KWSIIAQELA GRIGKQCRER WHNHLNPAIN KEAWTEEEEL TLIRAHEACG NKWAELSKYL  180
PGSVLSKFRS DNAIKNHWHS SVKKKRDSYM ASGLLAQFPP LPNVNHRNQS IPSSSTKLEQ  240
TSEDESVKKG AEVEEVTKCS QGSSLAECPQ STSDLGNTFV HIRENGEISE ELTHKKDTSS  300
SAAPCPRNYT PAFQAVSCSM LKVPSELVDS NSLEQYTYSH DWGNSTGKDW QFNMDDFMEF  360
IQESSGHYMH CLNGNEDHDM VTYPLQTATG SGETSYAGNT VEGPYNPNEM FDVSGIVYPE  420
VGIPQCSLPE TGVHYSGEPA DSFIYQSSNY QIPESGNMAP QNCNALSFDD VEASNCQQFS  480
VRSHFPSEDR SLVIGIASDQ FHYPLLENPV QESFTSRCDD FICPSEFGSP SNDNGIDNPV  540
LKDWPDHTKD SSRLEEQKDG GALYYEPPRF PSLDAPFLCC DLKPSGSDTQ QEYSPLGIRQ  600
MMMTSADCFT PLRLWESPSR NDSPDAILRS AAKTFTGSPS ILKKRQRHLV SPLSEKRCEK  660
KLESDLNRES FSNMATEIHQ VDDMFDESAN EKASTEDKGN LHPSSEDARK ETGDGVTELS  720
CIGNSETQLD DGGAHYHKEP HSESAEADAM EKHDRATGLS IKALGNQYAR RLEAASSNQV  780
TVSSSNETSC LSVVCSPDTL GKCRSSVVIA KSTQSTTSTI LENNPKNSEN GLVADTSNIF  840
GETPFKRSIE SPSAWKSPWF MNSFLSSPRY DRELAFEDLA LFMSPGDRSY DAIGLMKQLS  900
EQTAPAIADA RQILGSETPE TILLERSSNK QKADENSAPP ASNAMSERRT LDFSECGTPG  960
KGKDTTKFGS NNNSKSFKDR TFSNLKETIL SERSSNKQKV DVNSAPPASN AMSERRTLDF  1020
SVWNTGKGKR HYQIWQQQQH FKSFLLAVEM LQIASPFRIE PFLISKEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-59492058158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-59492058158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340265.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_006340266.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_015170956.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_015170959.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLM1BLH70.0M1BLH7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000478250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-157myb domain protein 3r-4