PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01725.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 30403.2 Da PI: 4.6888 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 110 | 157 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kKl+K++iL ++eY+k+Lq Sme2.5_01725.1_g00003.1 110 QDHVIAERKRREKLGDLFISLSKIVPGL-----KKLDKSSILGDTIEYMKELQ 157 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 110 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 111 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-16 | 112 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-11 | 112 | 161 | No hit | No description |
SMART | SM00353 | 1.2E-13 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEYTDNFNYE DECFYELKPN ISQDIYLSTQ SGGYNTNIEE KSGQIKAISP PLISSNNSSS 60 SSGGFVISFS SNQEEDIGAM ISSENACQES LLGGNYNNNV MYKRSPVQAQ DHVIAERKRR 120 EKLGDLFISL SKIVPGLKKL DKSSILGDTI EYMKELQEQV KLLEESKKNM SSSLEHNNSG 180 KEQVAGSNNI KVRILDKSVL INIHCNKQDG IVGRVLVQME QLHLSVDDIR IMPFGPSNLE 240 ISIHAQMEDE CSIHVEDIVK AIQINILDLI NN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | ERKRRE |
2 | 116 | 121 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 2e-99 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887136.1 | 1e-142 | transcription factor bHLH18-like | ||||
TrEMBL | A0A3Q7HRT8 | 1e-140 | A0A3Q7HRT8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g064590.1.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8864 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-26 | bHLH family protein |