PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01694.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SBP | ||||||||
Protein Properties | Length: 557aa MW: 60839.1 Da PI: 8.5435 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.1 | 4.7e-42 | 169 | 244 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dl+++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+ Sme2.5_01694.1_g00002.1 169 CQVQGCGKDLTSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPP 244 **************************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 163 | 230 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.718 | 166 | 243 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-39 | 167 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-31 | 169 | 242 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MESWSYFSAG KGFVTEESVS VNNGMGRVKN GVMGWELKTQ SSYGMCLSQE GSESQGFHEL 60 GSPNLMRKPI FCDQMRDGFT SNKHGGAASI FGSFSGEDKS SSKLSSSVVD SVSRDSSLID 120 LKLGRFPDHH VDGTIFKSPK SLSSSTSAES IVPAKRLRAG SVNSHKPFCQ VQGCGKDLTS 180 CKDYHKRHKV CEVHSKTAKV IVNGIEQRFC QQCSRFHLLG EFDDGKRSCR KRLAGHNERR 240 RKPPHTVHLI AHEGAEICLM IEGLDPISIL QNKVLTGTRF RGTSFVTSSF ACQDILGNRF 300 LHQPKYEMND WYKNVKVEDG VDYSPQLAMP FTNGQLQPKS HFTSYHAKKG CHTLHDGLSA 360 VTSSRINEST NSSLHDMRGS DFVSPSVFHT TSTGSEILHA LDTSSTIQGL SGISNSNNAL 420 SLLSSQSQGS SNHSTVFSTS RPLIPPSNNY NVTQASKNVL GLGPLVSAGR MSNTFNSSGV 480 NSAEDGLDQI LFPSNTCGIN RIIQGSDLVN PKNQLSCEDG PTIDLLQLSS QLQRVEHQRF 540 SMQVKQDSNA FPGLRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 168 | 242 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334260.1 | 0.0 | squamosa promoter-binding-like protein | ||||
TrEMBL | A0A3Q7FQM4 | 0.0 | A0A3Q7FQM4_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063046 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-45 | SBP family protein |