PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01688.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 289aa    MW: 32774.2 Da    PI: 6.0895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01688.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd +l+ + ++ G+g +W + +++ g++R++k+c++rw++yl
  Sme2.5_01688.1_g00002.1 14 RGPWSPEEDNILKTYLEKNGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62
                             89*********************************************97 PP

2Myb_DNA-binding45.41.9e-1469111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +T+eEd +++ +  q G++ W+ Ia+ ++ gRt++++k++w++
  Sme2.5_01688.1_g00002.1  69 GGFTEEEDNIILTLYSQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111
                              569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.808962IPR017930Myb domain
SuperFamilySSF466896.64E-2712109IPR009057Homeodomain-like
SMARTSM007174.5E-111364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-231569IPR009057Homeodomain-like
CDDcd001675.36E-81662No hitNo description
PROSITE profilePS5129422.6763117IPR017930Myb domain
SMARTSM007175.2E-1367115IPR001005SANT/Myb domain
PfamPF002497.9E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2370116IPR009057Homeodomain-like
CDDcd001676.59E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDNILKTYLE KNGTGGNWIS LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL TLYSQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKHLVA  120
QNNNFMDIIN YNSNNINSSG FNHNYLTSCY GKLDHSNTFT SHMEPNATNY DQFPLPNLME  180
IQENDASTIR LVQEDGHNLC SSNSFQILQK CATFEEFDTH SSTFLKNSSS TGYSYMDLSS  240
GISPSSSSSY YDDILENGLD FQENAIGGVD PNTSYYNNIL EIDPTFQRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-76HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060900.11e-150transcription factor MYB36-like
TrEMBLM0ZHL61e-147M0ZHL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009321e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-70MYB family protein