PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01687.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 679aa    MW: 75327.9 Da    PI: 5.9519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01687.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.93.3e-1302976641374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cAea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++
  Sme2.5_01687.1_g00003.1 297 LISLLMSCAEAIGSRNVTGVNQLIARLGQLASPRGSPISRLTAYFTEALALRVARLWPHIFHIIPPRDLD-RLDDDNNTALRLLNQ 381
                              5799*****************************************************************8.5667777999***** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              vsPi+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l
  Sme2.5_01687.1_g00003.1 382 VSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEAL 463
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              ++ fef++ v++ led++l++L+vk+gE++aVn++lq+h+ll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++
  Sme2.5_01687.1_g00003.1 464 NLAFEFHP-VVDGLEDVRLWMLHVKEGESVAVNCMLQMHKLLYDSSGGIL--RDFLGLIRSTNPTILLMAEQEAEHNEPSLEARLV 546
                              ********.7*******************************966655444..79******************************** PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              ++l+yy+a+fds+  +lp +s +rik+E+  ++r+i+n++aceg++r+erhe+++kW++ +e+ GF+   ++e ++ q ++ll+++
  Sme2.5_01687.1_g00003.1 547 NSLRYYAAVFDSIGFSLPLDSPARIKIEEL-FARDIRNIIACEGRDRTERHESFGKWQKLMEQGGFRCTGITEMEVLQSQMLLKMY 631
                              ****************************98.******************************************************* PP

                     GRAS 345 ksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                              + + yrv    +++++l+l W d+pL++vSaW+
  Sme2.5_01687.1_g00003.1 632 SCEDYRVIkqgNDDAALTLSWLDQPLYTVSAWT 664
                              *888*9984445589999**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.25271641IPR005202Transcription factor GRAS
PfamPF035141.2E-127297664IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQPIRPVGLS  60
VEKPIEAKNS TCSLKQNIRL PPSSTSAQTS YVEGRRESKD EFWESKGRSL KRYAEQGCID  120
DETCMSRVKR KKGNKKSGDC SEEGYGLSLS QLGGGDFWLQ SGYNVARSVP LIAGLHPPQA  180
APFSFSCSGE EESVCYVPSE VITPPLPRSN NPWIESVVTE ITNFGDKNVS TSQDPAKEPS  240
VSSTSLDSHG LVPRPNENPG EHEIGNGSGL PNPNDRVEVV AAHNGHNNHR EDDAVELISL  300
LMSCAEAIGS RNVTGVNQLI ARLGQLASPR GSPISRLTAY FTEALALRVA RLWPHIFHII  360
PPRDLDRLDD DNNTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDGLEDVR  480
LWMLHVKEGE SVAVNCMLQM HKLLYDSSGG ILRDFLGLIR STNPTILLMA EQEAEHNEPS  540
LEARLVNSLR YYAAVFDSIG FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHESFG  600
KWQKLMEQGG FRCTGITEME VLQSQMLLKM YSCEDYRVIK QGNDDAALTL SWLDQPLYTV  660
SAWTPLDAAG SSSSYHQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-7330466526380Protein SCARECROW
5b3h_A3e-7330466525379Protein SCARECROW
5b3h_D3e-7330466525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358871.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0ZTN80.0M0ZTN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein