PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01687.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 679aa MW: 75327.9 Da PI: 5.9519 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 425.9 | 3.3e-130 | 297 | 664 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL++cAea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + + +++ +al+l+++ Sme2.5_01687.1_g00003.1 297 LISLLMSCAEAIGSRNVTGVNQLIARLGQLASPRGSPISRLTAYFTEALALRVARLWPHIFHIIPPRDLD-RLDDDNNTALRLLNQ 381 5799*****************************************************************8.5667777999***** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 vsPi+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+ sk+ l etg+rLa+fAe+l Sme2.5_01687.1_g00003.1 382 VSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEAL 463 ***************************************************************....9****************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 ++ fef++ v++ led++l++L+vk+gE++aVn++lq+h+ll +s +++L l++s++P+++ ++eqea+hn++s+ +r++ Sme2.5_01687.1_g00003.1 464 NLAFEFHP-VVDGLEDVRLWMLHVKEGESVAVNCMLQMHKLLYDSSGGIL--RDFLGLIRSTNPTILLMAEQEAEHNEPSLEARLV 546 ********.7*******************************966655444..79******************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 ++l+yy+a+fds+ +lp +s +rik+E+ ++r+i+n++aceg++r+erhe+++kW++ +e+ GF+ ++e ++ q ++ll+++ Sme2.5_01687.1_g00003.1 547 NSLRYYAAVFDSIGFSLPLDSPARIKIEEL-FARDIRNIIACEGRDRTERHESFGKWQKLMEQGGFRCTGITEMEVLQSQMLLKMY 631 ****************************98.******************************************************* PP GRAS 345 ksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 + + yrv +++++l+l W d+pL++vSaW+ Sme2.5_01687.1_g00003.1 632 SCEDYRVIkqgNDDAALTLSWLDQPLYTVSAWT 664 *888*9984445589999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.25 | 271 | 641 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-127 | 297 | 664 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQPIRPVGLS 60 VEKPIEAKNS TCSLKQNIRL PPSSTSAQTS YVEGRRESKD EFWESKGRSL KRYAEQGCID 120 DETCMSRVKR KKGNKKSGDC SEEGYGLSLS QLGGGDFWLQ SGYNVARSVP LIAGLHPPQA 180 APFSFSCSGE EESVCYVPSE VITPPLPRSN NPWIESVVTE ITNFGDKNVS TSQDPAKEPS 240 VSSTSLDSHG LVPRPNENPG EHEIGNGSGL PNPNDRVEVV AAHNGHNNHR EDDAVELISL 300 LMSCAEAIGS RNVTGVNQLI ARLGQLASPR GSPISRLTAY FTEALALRVA RLWPHIFHII 360 PPRDLDRLDD DNNTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW 420 PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDGLEDVR 480 LWMLHVKEGE SVAVNCMLQM HKLLYDSSGG ILRDFLGLIR STNPTILLMA EQEAEHNEPS 540 LEARLVNSLR YYAAVFDSIG FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHESFG 600 KWQKLMEQGG FRCTGITEME VLQSQMLLKM YSCEDYRVIK QGNDDAALTL SWLDQPLYTV 660 SAWTPLDAAG SSSSYHQPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-73 | 304 | 665 | 26 | 380 | Protein SCARECROW |
5b3h_A | 3e-73 | 304 | 665 | 25 | 379 | Protein SCARECROW |
5b3h_D | 3e-73 | 304 | 665 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009279 | 0.0 | AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence. | |||
GenBank | AP010263 | 0.0 | AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358871.1 | 0.0 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | M0ZTN8 | 0.0 | M0ZTN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007879 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5568 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |