PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01675.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 983aa MW: 110735 Da PI: 4.9209 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 5 | 50 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Sme2.5_01675.1_g00003.1 5 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 50 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 57 | 100 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Sme2.5_01675.1_g00003.1 57 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.223 | 1 | 54 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 2 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.7E-13 | 7 | 67 | No hit | No description |
CDD | cd00167 | 6.56E-12 | 7 | 50 | No hit | No description |
SuperFamily | SSF46689 | 8.27E-21 | 30 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.85E-30 | 52 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-14 | 54 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 55 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 55 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.3E-55 | 403 | 644 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence Send to blast |
MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT 60 REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACTKDENY DPNDDPRKLK 120 PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS 180 LQKRRELKAA GIDVRQRKRK RRGIDYNAEI PFEKKPPPGF YDVTEEDRPV EQPKFPTTIE 240 ELEGERRVDK EARLRKQDIA RNKIAERQDA PTSILHANKL NDPEAVRKRS KLNLPAPQIP 300 DHELEAIAKI GIASDLIGGD ELSEGNAATR ALVASYAQTP QHAMTPMRTP QRTPSTKQDA 360 IMMEAENQRR LTQSQTPLLG GDNPLLHPSD FSGVTPKKRE VQTPNPLLTP SATPGATSFT 420 PRIGMTPSRD SYGMTPKGTP MRDELRINEE MDMHNNAKPG QFNSKKELLS GLKSLPQPKN 480 EYQIVIQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARRQ ALLRKSSKVL QRELPRPPIA 540 SLELIKSSLM RADEDKSSFV PPTLIEQADE MIRKELVSLL EHDNTKYPLD EKPEKEKKKV 600 KRKVVAEPAI EDFEEDELKE ADGLIKDEAQ FLRLAMGHES ESLDEFIEVH KTTLNDIMYF 660 PTRNAYGLSS VAGNMEKLAA LQNEFENVKK KMDDDTKKAA KLEQKIKVLT NGYQMRAGKL 720 WSQIESTFMK MDTAGTELEC FRALQKQEQL AASHRINNMW EEVQKQKELE RTSQKRYGDL 780 IEEKQKIQQL MDEYRLQAQM QEEIAAKNRA LELAKAEVVE KENVPSADDV EPSGTGQCSN 840 TEENSASASN VPIEADVHVE PSGTGQCSNA EENSASIEAD NVHVEPSGTG RCPIAEETST 900 SASHDGTPQD VEGQVKMGDV STMDAEAVSD HVPMEGQQNQ VEESNVDVTK TENSEVAAGD 960 VDVSETEDSK VVAGDGEADP ENV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 1 | 788 | 5 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 201 | KRRELKAAGIDVRQRKRKRR |
2 | 195 | 201 | QRKRKRR |
3 | 196 | 201 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU095496 | 0.0 | EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361426.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M1ATK6 | 0.0 | M1ATK6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400029953 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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