PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01675.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 983aa    MW: 110735 Da    PI: 4.9209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01675.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14550248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Sme2.5_01675.1_g00003.1  5 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 50
                             78*****************************.************986 PP

2Myb_DNA-binding32.81.6e-1057100248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Sme2.5_01675.1_g00003.1  57 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100
                              68*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.223154IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-18253IPR009057Homeodomain-like
SMARTSM007177.0E-15352IPR001005SANT/Myb domain
PfamPF139214.7E-13767No hitNo description
CDDcd001676.56E-12750No hitNo description
SuperFamilySSF466898.27E-2130106IPR009057Homeodomain-like
CDDcd116591.85E-3052103No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1454101IPR009057Homeodomain-like
PROSITE profilePS5129416.44355104IPR017930Myb domain
SMARTSM007171.7E-1255102IPR001005SANT/Myb domain
PfamPF118311.3E-55403644IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT  60
REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACTKDENY DPNDDPRKLK  120
PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS  180
LQKRRELKAA GIDVRQRKRK RRGIDYNAEI PFEKKPPPGF YDVTEEDRPV EQPKFPTTIE  240
ELEGERRVDK EARLRKQDIA RNKIAERQDA PTSILHANKL NDPEAVRKRS KLNLPAPQIP  300
DHELEAIAKI GIASDLIGGD ELSEGNAATR ALVASYAQTP QHAMTPMRTP QRTPSTKQDA  360
IMMEAENQRR LTQSQTPLLG GDNPLLHPSD FSGVTPKKRE VQTPNPLLTP SATPGATSFT  420
PRIGMTPSRD SYGMTPKGTP MRDELRINEE MDMHNNAKPG QFNSKKELLS GLKSLPQPKN  480
EYQIVIQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARRQ ALLRKSSKVL QRELPRPPIA  540
SLELIKSSLM RADEDKSSFV PPTLIEQADE MIRKELVSLL EHDNTKYPLD EKPEKEKKKV  600
KRKVVAEPAI EDFEEDELKE ADGLIKDEAQ FLRLAMGHES ESLDEFIEVH KTTLNDIMYF  660
PTRNAYGLSS VAGNMEKLAA LQNEFENVKK KMDDDTKKAA KLEQKIKVLT NGYQMRAGKL  720
WSQIESTFMK MDTAGTELEC FRALQKQEQL AASHRINNMW EEVQKQKELE RTSQKRYGDL  780
IEEKQKIQQL MDEYRLQAQM QEEIAAKNRA LELAKAEVVE KENVPSADDV EPSGTGQCSN  840
TEENSASASN VPIEADVHVE PSGTGQCSNA EENSASIEAD NVHVEPSGTG RCPIAEETST  900
SASHDGTPQD VEGQVKMGDV STMDAEAVSD HVPMEGQQNQ VEESNVDVTK TENSEVAAGD  960
VDVSETEDSK VVAGDGEADP ENV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.017885799Cell division cycle 5-like protein
5xjc_L0.017885799Cell division cycle 5-like protein
5yzg_L0.017885799Cell division cycle 5-like protein
5z56_L0.017885799Cell division cycle 5-like protein
5z57_L0.017885799Cell division cycle 5-like protein
5z58_L0.017885799Cell division cycle 5-like protein
6ff4_L0.017885799Cell division cycle 5-like protein
6ff7_L0.017885799Cell division cycle 5-like protein
6icz_L0.017885799Cell division cycle 5-like protein
6id0_L0.017885799Cell division cycle 5-like protein
6id1_L0.017885799Cell division cycle 5-like protein
6qdv_O0.017885799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201KRRELKAAGIDVRQRKRKRR
2195201QRKRKRR
3196201RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0954960.0EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361426.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLM1ATK60.0M1ATK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000299530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]