PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01674.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 101aa MW: 11583.1 Da PI: 11.0956 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.3 | 4.2e-25 | 6 | 84 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++++w+fF++ + ++a+g r++r t++gyWkatg+ v+s+ +++ +g k+t+vfykgrap+g+kt+W m+ey++ Sme2.5_01674.1_g00016.1 6 IKNDSEQWFFFIPIQDREARGGRPTRLTTQGYWKATGTPGFVFSSnNNRIIGGKRTMVFYKGRAPNGKKTQWKMNEYKA 84 566788*************************************9867778***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.5 | 1 | 101 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-25 | 7 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-11 | 12 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MAGEVIKNDS EQWFFFIPIQ DREARGGRPT RLTTQGYWKA TGTPGFVFSS NNNRIIGGKR 60 TMVFYKGRAP NGKKTQWKMN EYKASTQRDP SINNNHPTNL K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-15 | 11 | 83 | 71 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-15 | 11 | 83 | 71 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-15 | 11 | 83 | 71 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-15 | 11 | 83 | 71 | 141 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swm_B | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swm_C | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swm_D | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swp_A | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swp_B | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swp_C | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
3swp_D | 9e-15 | 11 | 83 | 74 | 144 | NAC domain-containing protein 19 |
4dul_A | 8e-15 | 11 | 83 | 71 | 141 | NAC domain-containing protein 19 |
4dul_B | 8e-15 | 11 | 83 | 71 | 141 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-112 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161530.1 | 3e-62 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9M290 | 4e-36 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A3Q7HZI4 | 1e-59 | A0A3Q7HZI4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g010160.1.1 | 8e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.1 | 2e-38 | NAC domain containing protein 61 |