PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01670.1_g00011.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 353aa MW: 39380.5 Da PI: 5.8468

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01670.1_g00011.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5.1e-31	157	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Sme2.5_01670.1_g00011.1 157 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 215 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.787	151	217	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.1E-31	153	217	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-26	155	217	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	156	216	IPR003657	WRKY domain
Pfam	PF03106	6.6E-26	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MENNYLGDLA DIFRGGSNST SGEPSTAVPE EWQFPYSAAP MAGQDFGDPF CNLRDPLFHD 60 VDMMQPSSNL EQNDPALFGD SPSIKRRGNM FSRKLDVPCN NTLLPNHDAC LLENSALHIS 120 SPRNTPIKRR KSLAKKVVCI PAAAPANSRQ GGEVVPSDLW AWRKYGQKPI KGSPYPRGYY 180 RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ TNNSKHTNNI 240 VIPNNPQSQT KEDGGHNDNN NVEQVNPKVK EEVGEEDGHQ QEVKNEFSKD SIYQPILPDS 300 SNQCHEDFFA DLIELEADPL NLLFSKTLSG EINQVGQKKG IDSFDLYDWS KDT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MENNYLGDLA DIFRGGSNST SGEPSTAVPE EWQFPYSAAP MAGQDFGDPF CNLRDPLFHD  60
VDMMQPSSNL EQNDPALFGD SPSIKRRGNM FSRKLDVPCN NTLLPNHDAC LLENSALHIS  120
SPRNTPIKRR KSLAKKVVCI PAAAPANSRQ GGEVVPSDLW AWRKYGQKPI KGSPYPRGYY  180
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ TNNSKHTNNI  240
VIPNNPQSQT KEDGGHNDNN NVEQVNPKVK EEVGEEDGHQ QEVKNEFSKD SIYQPILPDS  300
SNQCHEDFFA DLIELEADPL NLLFSKTLSG EINQVGQKKG IDSFDLYDWS KDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-25	131	218	2	80	Disease resistance protein RRS1
5w3x_D	3e-25	131	218	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	8e-75	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	8e-75	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359101.1	0.0	PREDICTED: probable WRKY transcription factor 14
Swissprot	O64747	5e-74	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	M1B7Q5	0.0	M1B7Q5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400039061	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6701	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-76	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]