PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01565.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1126aa MW: 122226 Da PI: 8.1047 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.3 | 1.1e-05 | 326 | 344 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+ C+ Sme2.5_01565.1_g00004.1 326 CGRHRCEQTCHVGPCGHCQ 344 ******************7 PP | |||||||
2 | zf-NF-X1 | 17.2 | 1.1e-05 | 390 | 407 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C +lCH+GpC+ C Sme2.5_01565.1_g00004.1 390 CGNHVCRELCHPGPCGDC 407 ****************99 PP | |||||||
3 | zf-NF-X1 | 16 | 2.6e-05 | 448 | 465 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H C++ CH G+C pC Sme2.5_01565.1_g00004.1 448 CGVHHCEAVCHSGDCAPC 465 ****************** PP | |||||||
4 | zf-NF-X1 | 18.6 | 4.1e-06 | 544 | 562 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Sme2.5_01565.1_g00004.1 544 CGQHSCESLCHSGHCPPCL 562 ******************6 PP | |||||||
5 | zf-NF-X1 | 18.1 | 5.8e-06 | 654 | 669 | 1 | 16 |
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H C ++CH+ pC+ Sme2.5_01565.1_g00004.1 654 CGLHACARTCHPSPCD 669 ***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.62E-5 | 147 | 218 | No hit | No description |
PROSITE profile | PS50016 | 8.716 | 156 | 217 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 159 | 214 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.978 | 159 | 215 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 2.50E-6 | 248 | 309 | No hit | No description |
SMART | SM00438 | 0.023 | 271 | 289 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 273 | 288 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.39E-12 | 316 | 364 | No hit | No description |
SMART | SM00438 | 0.021 | 326 | 345 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.7E-4 | 326 | 343 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.57E-9 | 380 | 425 | No hit | No description |
SMART | SM00438 | 1.1E-4 | 390 | 409 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.8E-4 | 390 | 407 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.69E-13 | 438 | 486 | No hit | No description |
SMART | SM00438 | 3.0E-4 | 448 | 467 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.6E-5 | 448 | 465 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 180 | 506 | 540 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 19 | 506 | 517 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.31E-9 | 534 | 586 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 544 | 563 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.0E-4 | 544 | 561 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.39E-4 | 591 | 639 | No hit | No description |
SMART | SM00438 | 0.34 | 601 | 619 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.02 | 654 | 684 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.3E-4 | 654 | 669 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.46E-4 | 682 | 731 | No hit | No description |
Pfam | PF01422 | 4.5 | 686 | 712 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.021 | 693 | 714 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.5E-4 | 821 | 885 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 2.4E-4 | 934 | 979 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1126 aa Download sequence Send to blast |
MSFPAQNNRR NNSSNRPRNN NNPVQSGVRR EWVARGSSTS TNAVSLSAAP VTPVATTTVV 60 TPGFGVNGRD NDNVSVAPVD WKRNQNQTYV EPKYNRGTYG NQRRERGRGR ESYNHQGNRM 120 ERLVRPINER INQERVKDPN LPQLVQEIEE KLLKGNVECM ICYDMVRRSA PIWSCSSCYS 180 IFHLSCTKKW ARAPTSVDTS AGKDQGFNWR CPGCQSVQLT SSREIRYLCF CGKRQDPSSD 240 LYLTPHSCGE PCGKKLEKEL PGNGLSEEDL CPHVCVLQCH PGPCPPCKAF APARSCPCGK 300 EVITTRCSDR KSALTCGQQC GKLLDCGRHR CEQTCHVGPC GHCQIVVNAH CFCKKKTESI 360 FCGDMGLKGD IKIEDGVFSC NSACGKKLNC GNHVCRELCH PGPCGDCALS PSKVKTCCCG 420 KTSLEEERQS CLDPIPTCSK VCGKSLRCGV HHCEAVCHSG DCAPCLVLVT QRCRCGSTSR 480 TVECYRTQAE DEKFTCDRPC GQKKNCGRHR CSERCCPLSN PRNSITGGWN PHFCSMPCEK 540 KLRCGQHSCE SLCHSGHCPP CLETIFTDLT CACGRTSIPP PLPCGTPLPS CQLPCSVSQP 600 CGHPPTHSCH FGDCLPCAVP VAKECVGGHV ILRNIPCGSK DIRCNKLCGK TRQCGLHACA 660 RTCHPSPCDV SAGPSNGSRA SCGQTCGAPR RDCRHTCTAL CHPSSPCPDV RCEFPVIITC 720 SCGRITANVP CDAGGQIVDT VFEASIIQKL PSPLQPIEIN GKKVPLGQRK LTCDDECAKM 780 EKKKVLSDAF GITPPNLEAL HLGENAAVSE VLGDLLRRDA KWVLSIEERC KFLVLGRSRG 840 GVNALKVHVF CPMSKEKRDA IRLIAARWKL SVNAAGWEPK RFIAVHVTPK SKAPTRILGT 900 KGTTVNNIAQ PAVFDYLVDM DPRLVVALFD MPRDADISAL VLRFGGECEL VWLNDKNALA 960 VFSDPARAAT AMRRLDQGSA YFGAAVVPQS GVASAVASTT NVWGVSGGAK DGGGVAALKG 1020 NPWKKAVVQE PHLRENPWDA EEWSNSPTDS VAPSAWKESE ATPAASSNRW SVLEPEITSS 1080 LPKASITIKE PVTETAVESS ISPPKPQDVG IDDMADVVDD WDKAYD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238462 | 0.0 | AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341494.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0V0IZ01 | 0.0 | A0A0V0IZ01_SOLCH; Putative NF-X1-type zinc finger protein NFXL1-like | ||||
STRING | PGSC0003DMT400036774 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |