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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sme2.5_01521.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 292aa MW: 32334.1 Da PI: 8.6193 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 102.9 | 2.1e-32 | 68 | 122 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
+++rY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e
Sme2.5_01521.1_g00001.1 68 SRARYRECLKNHAANIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEL 122
5789*************************9.999********************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 7.5E-30 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 8.5E-31 | 71 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 2.0E-22 | 71 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 26.715 | 72 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| SuperFamily | SSF46689 | 2.24E-16 | 217 | 279 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 220 | 282 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 2.4E-28 | 221 | 278 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 292 aa Download sequence Send to blast |
MALTGEEKEM RMSGSLGYHS LDQNIDHTVP PNIQDQSTGG GSGAAPVAGV APHNSSAGSN 60 KFNKVTSSRA RYRECLKNHA ANIGGNVTDG CGEFMPSGEE GTLEALKCAA CNCHRNFHRK 120 ELPNNGDNNN NNPGIMVVHP LQLPQPLPTP IPSMNHHHHH HHQHRGRSIW TTMPPQPVKM 180 AFGASGGSGA TDSSSEELNF NTYHHQQATS VPPQQPFLLA KKRFRTKFSQ EQKEKMLEFA 240 EKLGWRIPRE DDTEVQSFCS QVGVKRQVFK VWMHNNKNPS AKKNINQEDQ QP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 2e-24 | 222 | 278 | 18 | 74 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975443 | 1e-123 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016568547.1 | 1e-145 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
| Swissprot | Q9FRL5 | 1e-58 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
| TrEMBL | A0A1U8GB32 | 1e-144 | A0A1U8GB32_CAPAN; zinc-finger homeodomain protein 6 | ||||
| TrEMBL | A0A2G2V5W8 | 1e-144 | A0A2G2V5W8_CAPBA; Zinc-finger homeodomain protein 6 | ||||
| TrEMBL | A0A2G3AX59 | 1e-144 | A0A2G3AX59_CAPCH; Zinc-finger homeodomain protein 6 | ||||
| STRING | PGSC0003DMT400009581 | 1e-139 | (Solanum tuberosum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA518 | 24 | 128 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G18350.1 | 9e-51 | homeobox protein 24 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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