PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01519.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 360aa MW: 37460 Da PI: 8.375

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01519.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	35.7	1.8e-11	72	96	38	62
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 yWt+GGalr vPvGgg+r+nk+s+ Sme2.5_01519.1_g00001.1 72 LYWTRGGALRSVPVGGGCRRNKRSN 96 6*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.001	60	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-6	73	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MNFSSIPAYL DPANWQQQSG STIQNHHHQV LTSAQPPPVL PPPPVVVPPQ PHGGGGPCTH 60 ICTTAYFPES TLYWTRGGAL RSVPVGGGCR RNKRSNNNKN SNNNNNNSSK SPTSSTSTDG 120 RQGTSNSGST STISSHSNSF SGPTSAASLL GLMAPQIPPL RFMSPLGQFS SDHQHHHHFT 180 PSNHMNLSFS TSCGNMLGGA TEGMMVSSNN NLLGVGAGAG AGAGAGAGAG AGVGGVASLL 240 SSGNLEHWRM QQQFPNFLGG FDPSNSPSSY PFQGGVHEAV QFLGGASTSQ ITKPKISTSM 300 LNQMALVKME DNNNNNNNQD QSALSRQLLG IQGNNENWNA TNAWSDLSAS FSSSSTSNAL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MNFSSIPAYL DPANWQQQSG STIQNHHHQV LTSAQPPPVL PPPPVVVPPQ PHGGGGPCTH  60
ICTTAYFPES TLYWTRGGAL RSVPVGGGCR RNKRSNNNKN SNNNNNNSSK SPTSSTSTDG  120
RQGTSNSGST STISSHSNSF SGPTSAASLL GLMAPQIPPL RFMSPLGQFS SDHQHHHHFT  180
PSNHMNLSFS TSCGNMLGGA TEGMMVSSNN NLLGVGAGAG AGAGAGAGAG AGVGGVASLL  240
SSGNLEHWRM QQQFPNFLGG FDPSNSPSSY PFQGGVHEAV QFLGGASTSQ ITKPKISTSM  300
LNQMALVKME DNNNNNNNQD QSALSRQLLG IQGNNENWNA TNAWSDLSAS FSSSSTSNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542612.1	1e-131	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U8E5U1	1e-130	A0A1U8E5U1_CAPAN; dof zinc finger protein DOF2.4-like
STRING	Solyc09g010680.2.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63