PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01512.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 306aa    MW: 34621.9 Da    PI: 8.6543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01512.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016186208123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C++C+k+ +++  L +H   H
  Sme2.5_01512.1_g00005.1 186 YQCEICNKVLKSSQALGSHKTIH 208
                              9******************9887 PP
2zf-C2H212.30.00052236258123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp Cgk F +   L  H r+H
  Sme2.5_01512.1_g00005.1 236 HECPFCGKIFESGQALGGHKRSH 258
                              79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.53E-5432No hitNo description
PROSITE profilePS5015710.346633IPR007087Zinc finger, C2H2
PfamPF139126.9E-9630IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993186213IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-9186258No hitNo description
PfamPF139124.7E-6186210IPR007087Zinc finger, C2H2
SMARTSM003550.021186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4234258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-10235258IPR007087Zinc finger, C2H2
SMARTSM003550.025236258IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138236258IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR ALPLPPKTPP QKQDSGGRSE STLSLYSLKE  60
EEGEEIREEK HLGYYGLREN PKKSSRIVDP EFLDAGSVVH DRDQSETEST KKPTRRRSKR  120
SRRIFVSEEA VDDHREVKKE KSAEFEPVSS FSDTSPEEDI AVCLMMLSKD VWRNSKFRYE  180
ISKGKYQCEI CNKVLKSSQA LGSHKTIHKK NNSDEQNRVG KSRESRVIQN VDQKVHECPF  240
CGKIFESGQA LGGHKRSHIL SSSITASSSS KVGDSLMDST SAKFPYGFID LNMPAPMEDE  300
DEDFSH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078061.11e-157zinc finger protein ZAT4-like
TrEMBLM1AV171e-159M1AV17_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000309861e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-31C2H2-like zinc finger protein