PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01502.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36885.2 Da PI: 7.7974 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++++G+ +W + +++ g++R++k+c++rw++yl Sme2.5_01502.1_g00010.1 14 RGPWSPEEDAKLKHFIEKYGTAgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 36.3 | 1.3e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed + + + G++ W+ Ia+ ++ gRt++++k++w++ Sme2.5_01502.1_g00010.1 69 GDFTDDEDRVICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.605 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.914 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.81E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKHFIE KYGTAGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTDDEDRVIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 NNVPSSDNQR LPFFPSQIAP PQPHMVSTPF RDTLNAAVCN NNNINFSLGS NQYSYYLQSQ 180 ERLVNSLKYC TLKNNNLLMF GGTDQASCSS SDGSCSQMSY EKEIKKERQI GNCNFTYEET 240 QNINLVDYGN NIIGCGNISQ YAQKLNHVDL GNNTQNDQLQ YDVEEVKQLI SSGSDCTNHH 300 NLFYHDENKT DEREMCYYLG SHLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343741.1 | 1e-172 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4B939 | 1e-114 | A0A1S4B939_TOBAC; transcription factor RAX2-like | ||||
TrEMBL | A0A1U7WIB2 | 1e-114 | A0A1U7WIB2_NICSY; transcription factor RAX2-like | ||||
STRING | XP_009616199.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-76 | myb domain protein 36 |