PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01492.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 323aa MW: 36791.8 Da PI: 8.3846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01492.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00097	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+k F+++ H + H Sme2.5_01492.1_g00003.1 135 YQCVHCKKNFPSSQAIAGHTKGH 157 9***********99998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	135	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	137	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRMLRWMCGY SGRDRTKNED ILAGVTYVED KMQEARLIWL EHVMRRCMVP QCGRLTEDMI 60 LDRKVWRTRI RVEGLFLSRA EGLSSEVELW SCRHSTLPRS NFIFATVVFF FSLNEISVMP 120 HQIQGQNGQQ GMWMYQCVHC KKNFPSSQAI AGHTKGHFRD GWVKGTPQRK VFVLFSDYQQ 180 QQGSTSDSSI PEKQVFSAAT PETDLTDAHQ LPKGDVQNAR SLAVQPPSPG SSSRQPRIPR 240 HHLRLRDLKI LARLRARLTR EEQNVILRLL DSAMEQAKQS SKKSAEAEMI PNIDPEAAAA 300 IGTTDKDTDV VTSDESDDES QNM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215442	1e-178	AC215442.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0002K14, complete sequence.
GenBank	HG975441	1e-178	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-178	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362618.1	1e-126	PREDICTED: uncharacterized protein LOC102583262
TrEMBL	A0A3Q7F152	1e-117	A0A3Q7F152_SOLLC; Uncharacterized protein
STRING	Solyc02g068990.2.1	1e-118	(Solanum lycopersicum)