PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01490.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 169aa    MW: 19022.1 Da    PI: 4.4949
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01490.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB48.22.6e-1520115797
                    NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                               lP + v r++k+ l    +++ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f +++eplk+ l
  Sme2.5_01490.1_g00005.1  20 GLPKTIVRRVVKEKLSqlsTDTDISllRDSLTAFSESARIFIHYLSAAANDICKESKRQTINAEDVFKALEDIEFSEFIEPLKAAL 105
                              5788888999998764111566676447999999**************************************************** PP

                    NF-YB  88 kkyrelegek 97 
                              + +re ++++
  Sme2.5_01490.1_g00005.1 106 EGFREKNSKR 115
                              *****88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-318153IPR009072Histone-fold
SuperFamilySSF471132.67E-2420129IPR009072Histone-fold
PfamPF008084.7E-92189IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAEVEKEKEK EVTVQIDQEG LPKTIVRRVV KEKLSQLSTD TDISLLRDSL TAFSESARIF  60
IHYLSAAAND ICKESKRQTI NAEDVFKALE DIEFSEFIEP LKAALEGFRE KNSKRKSASS  120
KLPESNKKAK LKEPVENGKG KMNEQPSDNE NEDAQTAEES NEVEDSVDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A8e-1111311125DNA polymerase epsilon subunit D
5y27_A8e-1111311125DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170041e-59AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBankHG9755231e-59HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362889.17e-96PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLM1CHV02e-94M1CHV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000677673e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-39nuclear factor Y, subunit B11