PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01472.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37461 Da PI: 6.0415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++++G+g+W+t ++ g+ R++k+c++rw +yl Sme2.5_01472.1_g00004.1 14 KGPWTPEEDNKLIQYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ +E+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Sme2.5_01472.1_g00004.1 67 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.653 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.752 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRSPCCDKN GLKKGPWTPE EDNKLIQYIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFDEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG 120 IDPVTHSPRL DLLDLSSLLN STQSNLSSLL GLQALVNPDV FRLAYTLLAS QNESTPEMLL 180 QKLQENNQMF NSQLQNQEGS ELLLQKLQQN QILNSQLQNQ PQFYQFQNQI QELPNFTTQN 240 VSQPMQLGHV EESYLMNCQM LPPQNYGNCN SDASDTSTFQ SLNNNSSNQN ISSDSVLSTP 300 TENEKESYCS NLMKFEIPES LNFDDFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-29 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357551.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9LDR8 | 1e-102 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | M1BKB2 | 0.0 | M1BKB2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047219 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 8e-89 | myb domain protein 41 |
Publications ? help Back to Top | |||
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