PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01459.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42225.5 Da PI: 4.6839 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Sme2.5_01459.1_g00005.1 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARRIRG 161 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-37 | 112 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 112 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 112 | 171 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.42E-33 | 112 | 170 | No hit | No description |
PROSITE profile | PS51032 | 24.131 | 112 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 113 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MCGGSIISDY IDPSRTSRRL TAELLWGRLD LIKKQKNPSN YHSKHLRSDA IDDFEADFQD 60 FKELSDDEDV EVDVKPFAFS ASKQSTGSKS VKTVDSNKDT ADRSSKRKRK NQYRGIRQRP 120 WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDIEARRIR GKKAKVNFPD ETPAPASRHT 180 VKVDPQKALP KESLDSFQSV SAIMNSLEGG SYDSLGVFDE KPMTKQYGYE SGSSASADTG 240 LGSFIPSAGG DINFSSDVGS NSFERSDFGW GEPCSRTPEI SSVLSAAVES NEAQFVEDTN 300 LQEKLKSCTN NPVANDGNTV NVLSEDLSAF EPQMNFFQLP YIEGNWDASL DSFLNTSATQ 360 NGENAMDLWS FDDVPSLMGG VF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 112 | 169 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-20 | 111 | 171 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013179 | 0.0 | BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342909.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2 | ||||
TrEMBL | A0A0V0IEL3 | 0.0 | A0A0V0IEL3_SOLCH; Putative ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | PGSC0003DMT400023609 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 2e-68 | related to AP2 12 |