PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01445.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 779aa    MW: 86824 Da    PI: 9.7973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01445.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-131461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd +lv+ +   G  +W+ +++  g+ R++k+c++rw +yl
  Sme2.5_01445.1_g00001.1 14 RGPWTIEEDHKLVHFILNNGIQCWRNVPKLAGLQRCGKSCRLRWINYL 61
                             89********************************************97 PP
2Myb_DNA-binding49.87.7e-1667110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Sme2.5_01445.1_g00001.1  67 RGALSEAEEDQIIELHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110
                              78889*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.786961IPR017930Myb domain
SuperFamilySSF466891.54E-2711108IPR009057Homeodomain-like
SMARTSM007171.6E-61363IPR001005SANT/Myb domain
PfamPF002493.5E-111461IPR001005SANT/Myb domain
CDDcd001672.99E-51661No hitNo description
PROSITE profilePS5129426.10762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2365116IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1467110IPR001005SANT/Myb domain
CDDcd001677.30E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRNV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIE LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLQVMR  120
IDPLTHQPID KEKYQHEPDD KTELLSRTET YDKINETENF TGNTNDISLP YHNMLSENIN  180
VDLWNKNCKT CYSPSISLEA EESINFSTTS TATESSSPGS TAHLFNEAGR HHDSWGSCSP  240
IQLVDVRILF TDIVVARRRK REKNECDPER RHVGIMSGEP VGNYGVRLMM EDSPCLMHAF  300
SYASAIPNEV KKGNPVHALG ESISFGRFVS ESLDWEKWST FSHKKYVEEA ERYAKPGSVA  360
QKKAFFEAHY KKIAAQKAAA LLEQANQENP NSEITNNSAP DSASLEKTHV EANQEQVHEK  420
PGSLTRDSIV KADVEETEND APVEGPGTPE ATEKEPSNQI ENGQTQETVS GSEISETSHT  480
EKPLLKNKDS SSKLEDDAAS VTSKKKSAFA SFKSAVYSKK SKVPPSPTRH SIPLDIDKEN  540
NFTPITTNSN LDLMNEMRST PKSLGKLINF PPAKEPHKIP PPPPFHKKGS PKVAPTTTKA  600
SKKCATPIKT PMATLNGESN HPMTTPASES RRIKTPIHPS ASGSRTAGPK WNLLSSVIKV  660
LVKGSNTNSL SVSKNRGKGF GAGRVEKGLI PSLNIREKAG TEFKKLRQSL CFKARPLPDF  720
YKETETAKDH TKKIPVTQAQ LPKRGRMPYP SSKQGLISKP ASSSLTKNDS CKNPRKKTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-175HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338650.10.0PREDICTED: histone H3.v1-like isoform X2
TrEMBLM1AYB50.0M1AYB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.17e-76myb domain protein 40