PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01443.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 422aa    MW: 47639.8 Da    PI: 4.3866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01443.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-153482355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + GVr+++ +g+W +eI+d +   ++ r +lg++ taeeAa+a+++a+  l+g
  Sme2.5_01443.1_g00004.1 34 FVGVRQRP-SGKWISEIKDTT---QKLRMWLGTYETAEEAARAYDQAAVLLRG 82
                             78******.7*********32...35**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.1513390IPR001471AP2/ERF domain
SMARTSM003801.5E-313396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-263389IPR001471AP2/ERF domain
PRINTSPR003672.2E-73445IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-183490IPR016177DNA-binding domain
PfamPF008475.8E-103478IPR001471AP2/ERF domain
CDDcd000185.55E-283489No hitNo description
PRINTSPR003672.2E-75672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEINFQKQQE IEAISLNKAT KFKGRKRSKG PNSFVGVRQR PSGKWISEIK DTTQKLRMWL  60
GTYETAEEAA RAYDQAAVLL RGSNTRTNFL TTCVSQDSPL ASRIRNLLNI KKIAKERSLD  120
YFADSTSSSS NSVRSSELIS NCDDPISSGN AKRSNLYETT LSCDQEIIQE SCQLFDSSPC  180
DDPISSENAK RINLNETLLS YNTNDNNIPS VILQVRSGEG SVYSNITPTL GSRETVSERE  240
TVLSCDQEII QESHLLFDSN SVESSTTSVT SSHISNYDDH LYETLLSYNN ILNVIPQVKS  300
DQEGNMYADI TPMLEVKEKV LSCDQEMIQE SQPFDDFNTY KPDLDIGTSS SCSSSCFSSE  360
LSWDFEELLD IPSKIEMQLT EFEMMKVERQ ISASLYAVNG VQDYMEIIHE TLWDHHPLSY  420
SW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329GRKRSKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-121HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351415.10.0PREDICTED: uncharacterized protein LOC102592135
TrEMBLA0A2G3BH191e-135A0A2G3BH19_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000609364e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11