PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01430.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 213aa MW: 24884.4 Da PI: 10.0735 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 73.3 | 4.5e-23 | 45 | 129 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 fqr+ws+e ei++L + +++ + ps d d f +fvk++++ k +k+ql K+ rL+kK+k++v+k sf k+h++k Sme2.5_01430.1_g00012.1 45 FQRVWSKEEEIAILEAYLNY----PSRPSTDYDSFLNFVKGRLQEKTTKTQLQHKLTRLRKKYKRNVEK------RSFLKPHEEKL 120 9*******************....56799****************************************......9********** PP DUF573 89 felskkiWg 97 f+lsk+iWg Sme2.5_01430.1_g00012.1 121 FKLSKRIWG 129 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-23 | 45 | 129 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MASINLSKKQ KSKCDDSDTE WRPSIESDDS DNHPTKKQKM ENVGFQRVWS KEEEIAILEA 60 YLNYPSRPST DYDSFLNFVK GRLQEKTTKT QLQHKLTRLR KKYKRNVEKR SFLKPHEEKL 120 FKLSKRIWGE QVKAKAKAKV EGSDLVLREG SAADLEDWFR RNPGQLISDK DREEMLEKLQ 180 SVKIGKARQY LSEIQVMEEQ AKLAIHALQA TLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769939.1 | 7e-79 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A2G2XBR4 | 2e-78 | A0A2G2XBR4_CAPBA; Uncharacterized protein | ||||
STRING | XP_009763764.1 | 7e-51 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-12 | DNA-binding storekeeper protein-related transcriptional regulator |