PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01424.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 539aa    MW: 59993 Da    PI: 5.9589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01424.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.32e-1291695391374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+elL++cAeavs++d + aq l++ l++++s +g pm+Rl ay++e+L+arl++s+s +yk+l+++e +    se l+++++ ++
  Sme2.5_01424.1_g00007.1 169 LKELLYACAEAVSDSDISTAQVLMNALEQQVSVSGAPMERLGAYVLEGLRARLLSSGSIIYKKLKCKEPT---GSELLSYMQVIYN 251
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P++kf+++ aN  I ea+ +e+r+HiiDf+i qG QW+ L++ La Rp+gpp +RiTgv+++es+  +   l+ +gerLa++A+
  Sme2.5_01424.1_g00007.1 252 MCPYYKFAYMSANVVIREAMMNENRIHIIDFQIAQGSQWMFLIHDLARRPGGPPFVRITGVDDAESSyaRGGGLQLVGERLADIAK 337
                              ***************************************************************999999999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gvpfef+  +a +  +++le+Lrv++gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl r
  Sme2.5_01424.1_g00007.1 338 SCGVPFEFHG-AALSGCEVQLENLRVRHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPR 422
                              **********.8999*********************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e++++y a+f+s++a  pr+++eri+ E+++++r+ivn++acega+r+erhe ++kWr rl++aGF+p ++s ++ + +k +l+
  Sme2.5_01424.1_g00007.1 423 FRETVDHYRAMFESIDAARPRDDKERISAEEHCVARDIVNIIACEGADRVERHELFGKWRLRLMMAGFTPCQMSPSVGEAIKDMLK 508
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ + yr  e++g+l+lgWk+r+L + SaWr
  Sme2.5_01424.1_g00007.1 509 EYSPN-YRFAESQGALYLGWKNRALATSSAWR 539
                              ***55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.301143520IPR005202Transcription factor GRAS
PfamPF035147.0E-127169539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQASQRTQMS GTVPRLYNQH VEQYYAPYNV LKNGCKGSRS SGMQFSLQAQ DEQFFTLDSS  60
PATDCVVNDS PPGVSVSSNR SPFSPQCSQS YMSDVYHSSD NTCGSPLSGC SGTDDVDLRL  120
VLQELENKLL GPESDTDDSC SCSLIDVVSK PSNVTRWNRV VDMAPGLNLK ELLYACAEAV  180
SDSDISTAQV LMNALEQQVS VSGAPMERLG AYVLEGLRAR LLSSGSIIYK KLKCKEPTGS  240
ELLSYMQVIY NMCPYYKFAY MSANVVIREA MMNENRIHII DFQIAQGSQW MFLIHDLARR  300
PGGPPFVRIT GVDDAESSYA RGGGLQLVGE RLADIAKSCG VPFEFHGAAL SGCEVQLENL  360
RVRHGEALAV NFPYMLHHMP DESVSTINHR DRLLRLVKSL SPKIVTLVEQ ESNTNTAPFL  420
PRFRETVDHY RAMFESIDAA RPRDDKERIS AEEHCVARDI VNIIACEGAD RVERHELFGK  480
WRLRLMMAGF TPCQMSPSVG EAIKDMLKEY SPNYRFAESQ GALYLGWKNR ALATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6017653826378Protein SCARECROW
5b3h_A2e-6017653825377Protein SCARECROW
5b3h_D2e-6017653825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430270.0AC243027.1 Solanum tuberosum chromosome 11 clone RH073I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059104.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3Q7IRV00.0A0A3Q7IRV0_SOLLC; Uncharacterized protein
STRINGSolyc11g012510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13