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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01409.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 447aa MW: 50275.1 Da PI: 6.9464 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01409.1_g00005.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 273.5 | 6.8e-84 | 76 | 443 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....f 84
lLl Ae +++++l +a++lL+ + + ++g+p++R++ yf+e L++r+ + ++++ + ++ + +++n +e l+ ++
Sme2.5_01409.1_g00005.1 76 LLLVSAETLANRQLDCARKLLNLFINFSLSAGNPVRRVVYYFAESLRKRIDK-GTGIPTITaNMDAVNPNNLEELLMDPRTdvieT 160
78889**********************************************9.555554443666666677777777777777789 PP
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA 169
++ P+ k++++t qaI++++++ +r+H iD++i+ G QW L+qaL e pp l+iT+vg s ++++e+g+rL++fA
Sme2.5_01409.1_g00005.1 161 EQMLPFRKVTQFTGIQAIVDSIKSFKRIHLIDLGIKSGSQWTILMQALVGNGECPPeLLKITAVGT----SLTRMQEIGKRLTSFA 242
9************************************************8876666599*******....9*************** PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
++lg+pf+f++ v+++l +++ + ++ + gE++aV + +l +ll+ + +l+s +++++ksl P v+vv+e ea++n++ F +
Sme2.5_01409.1_g00005.1 243 DTLGIPFSFKT-VVSDLRNIRKDFFESRVGEVVAVYSDSRLWTLLAWPNHLQS----LIQVIKSLHPCVMVVTEIEANTNTPIFID 323
***********.7999*****************************77766666....***************************** PP
GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
rf eal yysa+fdsle+ ++ ++++r + ++lg+ i+nv++ eg+e ++rhe+l++Wr+ ++ +G ++ +ls++ qakll
Sme2.5_01409.1_g00005.1 324 RFNEALFYYSAIFDSLETCIGWNHQHREVAQGVYLGKVIENVITSEGEEMVHRHEKLGSWRALFKGFGIEETELSHSSLYQAKLLA 409
************************************************************************************** PP
GRAS 342 rkvksdgy.rveeesgslvlgWkdrpLvsvSaWr 374
++ +g+ ++e + +sl++ Wk+ p+ s+SaW+
Sme2.5_01409.1_g00005.1 410 EESTCHGFcSLEMDGKSLIIKWKGTPIKSLSAWK 443
****999637889999999**************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MYKSKGKVND MNLDIPSHIS GCSPVLSTTT IMRIAKEQLQ LYTSQNHDSS SIILSPLIAD 60 FGLSPQVKEE VELALLLLVS AETLANRQLD CARKLLNLFI NFSLSAGNPV RRVVYYFAES 120 LRKRIDKGTG IPTITANMDA VNPNNLEELL MDPRTDVIET EQMLPFRKVT QFTGIQAIVD 180 SIKSFKRIHL IDLGIKSGSQ WTILMQALVG NGECPPELLK ITAVGTSLTR MQEIGKRLTS 240 FADTLGIPFS FKTVVSDLRN IRKDFFESRV GEVVAVYSDS RLWTLLAWPN HLQSLIQVIK 300 SLHPCVMVVT EIEANTNTPI FIDRFNEALF YYSAIFDSLE TCIGWNHQHR EVAQGVYLGK 360 VIENVITSEG EEMVHRHEKL GSWRALFKGF GIEETELSHS SLYQAKLLAE ESTCHGFCSL 420 EMDGKSLIIK WKGTPIKSLS AWKFYHV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238908 | 0.0 | AC238908.8 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126f9 map 1, complete sequence. |
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |